Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 78.0 | 75.73 |
| Solyc03g033900.1.1 | Tomato | nucleus | 97.0 | 53.01 |
| Solyc03g033940.1.1 | Tomato | nucleus | 96.0 | 51.06 |
| Solyc03g033880.1.1 | Tomato | cytosol | 90.0 | 48.91 |
| Solyc03g033890.1.1 | Tomato | nucleus | 51.0 | 36.43 |
| Solyc06g065960.1.1 | Tomato | nucleus | 30.0 | 32.97 |
| Solyc03g033570.1.1 | Tomato | nucleus | 52.0 | 28.57 |
| Solyc06g054680.1.1 | Tomato | nucleus | 39.0 | 21.67 |
| Solyc10g018110.1.1 | Tomato | nucleus | 39.0 | 21.2 |
| Solyc06g059780.1.1 | Tomato | nucleus | 38.0 | 21.11 |
| Solyc04g056550.1.1 | Tomato | nucleus | 38.0 | 20.88 |
| Solyc04g056740.1.1 | Tomato | nucleus | 36.0 | 20.0 |
| Solyc03g034260.1.1 | Tomato | nucleus | 35.0 | 19.02 |
| Solyc10g018080.1.1 | Tomato | cytosol | 28.0 | 18.54 |
| Solyc10g050900.1.1 | Tomato | nucleus | 31.0 | 18.34 |
| Solyc10g050940.1.1 | Tomato | nucleus | 29.0 | 17.16 |
| Solyc01g097850.1.1 | Tomato | nucleus | 27.0 | 15.7 |
| Solyc10g050950.1.1 | Tomato | nucleus | 25.0 | 15.53 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 15.0 | 12.82 |
| Solyc10g018070.1.1 | Tomato | nucleus | 14.0 | 11.76 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 24.0 | 11.16 |
| Solyc01g106710.1.1 | Tomato | nucleus | 22.0 | 9.95 |
| Solyc01g106720.1.1 | Tomato | nucleus | 21.0 | 9.95 |
| Solyc11g069770.1.1 | Tomato | nucleus | 17.0 | 9.39 |
| AT1G54760.1 | Thale cress | nucleus | 14.0 | 8.7 |
| CDX99867 | Canola | nucleus | 16.0 | 8.25 |
| Solyc04g064860.1.1 | Tomato | plastid | 18.0 | 7.73 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 19.0 | 7.72 |
| AT1G28450.1 | Thale cress | nucleus | 14.0 | 7.57 |
| AT1G28460.1 | Thale cress | nucleus | 13.0 | 7.14 |
| Solyc01g106700.2.1 | Tomato | nucleus | 15.0 | 7.04 |
| AT1G29962.1 | Thale cress | nucleus | 13.0 | 7.03 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 17.0 | 6.97 |
| Solyc01g106730.1.1 | Tomato | mitochondrion | 14.0 | 6.33 |
| Solyc04g047870.1.1 | Tomato | mitochondrion, nucleus | 12.0 | 6.32 |
| CDY26304 | Canola | nucleus | 11.0 | 5.95 |
| Bra032347.1-P | Field mustard | nucleus | 11.0 | 5.91 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 20.0 | 5.76 |
| Solyc04g025110.1.1 | Tomato | mitochondrion, nucleus, plastid | 7.0 | 5.38 |
| Solyc01g060300.1.1 | Tomato | nucleus | 8.0 | 3.79 |
| Solyc04g025030.1.1 | Tomato | mitochondrion | 5.0 | 3.7 |
| Solyc01g060310.1.1 | Tomato | nucleus, plastid | 2.0 | 1.44 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc03g033930.1.1 | EnsemblPlantsGene:Solyc03g033930.1 | ncoils:Coil | SEG:seg | UniParc:UPI0002767BB0 | UniProt:K4BFR5 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:5608131..5608433
Molecular Weight (calculated)
11433.4 Da
IEP (calculated)
4.444
GRAVY (calculated)
-0.741
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MELDLGTRLV AENARNIAIE NNIRLNELEA REAAEKEKIR SLEQMNNARE KCWWESIDQI DAENLTTFET TLNFAEGILK DQLKKLEIGT SSSSEAPPRK
001: MSMEATELQD LSDDADYAAS QQQGSASMMR SDSGKRSLQS EHEDAVLIYL KDNVAIHPTQ FASERISGRL KLTKQDSVLF LSWIPYKGQT SNAKLSEKVS
101: ISFLDRSLYT ITAVPFTEVR SIRRHTPALG WQYVIVVLSS GLAFPPLYFY NGGVREFLAM VKQHVFLARS SEDQNVFIVN DFQSPLQRTL SSLELPSSLP
201: VASGQSVYPL DGGSSSENQR RTSSDVGNRV SSVSQSGFRK QKSHDPTRDL SIHLLEKFSL VTKFARDTTT QLFSENNGFG SIDKRWNNQP VHSYPEKLSN
301: IAEEKHHEIR HSYSENDLLK DDEISYIDVP ADPLEFDKLS LMWGKPRQPP MGHKEFTALL DSEGRVVESK ALRERVFYGG IEHQLRREVW PFLLGYYAYD
401: STYAEREYLR SVKRMEYATL KQQWQSISPE QAKRFTKYRE RKGLIDKDVV RTDRAFEYYE GDDNLHVNSM RDILLTYSFY NFDLGYCQGM SDYLSPILFV
501: MEDESESFWC FVALMERLGP NFNRDQNGMH TQLFALSKLV ELLDSPLHNY FKENDCLNYF FCFRWILIQF KREFEYEKTM QLWEVMWTHY LSEHFHLYVC
601: VAVLKRCRSK IMGEQMDFDT LLKFINELSG HIDLDSTVRD AEALCIEAGE NGAASIPPGT PPSLPLDDGT LYPQEDDVL
101: ISFLDRSLYT ITAVPFTEVR SIRRHTPALG WQYVIVVLSS GLAFPPLYFY NGGVREFLAM VKQHVFLARS SEDQNVFIVN DFQSPLQRTL SSLELPSSLP
201: VASGQSVYPL DGGSSSENQR RTSSDVGNRV SSVSQSGFRK QKSHDPTRDL SIHLLEKFSL VTKFARDTTT QLFSENNGFG SIDKRWNNQP VHSYPEKLSN
301: IAEEKHHEIR HSYSENDLLK DDEISYIDVP ADPLEFDKLS LMWGKPRQPP MGHKEFTALL DSEGRVVESK ALRERVFYGG IEHQLRREVW PFLLGYYAYD
401: STYAEREYLR SVKRMEYATL KQQWQSISPE QAKRFTKYRE RKGLIDKDVV RTDRAFEYYE GDDNLHVNSM RDILLTYSFY NFDLGYCQGM SDYLSPILFV
501: MEDESESFWC FVALMERLGP NFNRDQNGMH TQLFALSKLV ELLDSPLHNY FKENDCLNYF FCFRWILIQF KREFEYEKTM QLWEVMWTHY LSEHFHLYVC
601: VAVLKRCRSK IMGEQMDFDT LLKFINELSG HIDLDSTVRD AEALCIEAGE NGAASIPPGT PPSLPLDDGT LYPQEDDVL
Arabidopsis Description
RabGAP/TBC domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KG91]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.