Factsheet for Solyc04g025970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 1
peroxisome 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g102260.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24840.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT2G24840.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT2G24840.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT2G24840.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT2G24840.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT2G24840.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT2G24840.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT2G24840.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT2G24840.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT2G24840.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT2G24840.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT2G24840.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT2G24840.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT2G24840.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT2G24840.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT2G24840.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT2G24840.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT2G24840.1	Solyc01g102260.2.1	AT5G48670.1	18599653
AT2G24840.1	Solyc01g102260.2.1	AT5G48670.1	18713950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g018080.1.1	Tomato	cytosol	51.28	39.74
Solyc10g018070.1.1	Tomato	nucleus	40.17	39.5
Solyc03g033570.1.1	Tomato	nucleus	58.12	37.36
Solyc03g033890.1.1	Tomato	nucleus	42.73	35.71
CDY36151	Canola	nucleus	26.5	35.23
Solyc10g018110.1.1	Tomato	nucleus	48.72	30.98
Solyc10g050950.1.1	Tomato	nucleus	41.88	30.43
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	14.53	30.36
Solyc10g050940.1.1	Tomato	nucleus	41.88	28.99
Solyc03g033900.1.1	Tomato	nucleus	45.3	28.96
Solyc06g059780.1.1	Tomato	nucleus	44.44	28.89
Solyc03g033880.1.1	Tomato	cytosol	45.3	28.8
Solyc10g050900.1.1	Tomato	nucleus	41.03	28.4
Solyc01g097850.1.1	Tomato	nucleus	41.03	27.91
Solyc06g054680.1.1	Tomato	nucleus	42.73	27.78
Solyc04g056550.1.1	Tomato	nucleus	42.73	27.47
Solyc04g056740.1.1	Tomato	nucleus	41.88	27.22
Solyc03g033940.1.1	Tomato	nucleus	43.59	27.13
Solyc03g007020.1.1	Tomato	mitochondrion, nucleus, plastid	41.88	22.79
Solyc03g034260.1.1	Tomato	nucleus	34.19	21.74
Solyc11g069770.1.1	Tomato	nucleus	29.06	18.78
Bra032057.1-P	Field mustard	nucleus	28.21	18.33
Solyc01g106710.1.1	Tomato	nucleus	32.48	17.19
Solyc01g106720.1.1	Tomato	nucleus	30.77	17.06
Bra007829.1-P	Field mustard	nucleus	29.06	16.43
Solyc04g047870.1.1	Tomato	mitochondrion, nucleus	26.5	16.32
Solyc04g025110.1.1	Tomato	mitochondrion, nucleus, plastid	17.95	16.15
GSMUA_Achr4P28260_001	Banana	nucleus	33.33	15.85
Solyc01g060310.1.1	Tomato	nucleus, plastid	18.8	15.83
Solyc04g025030.1.1	Tomato	mitochondrion	17.95	15.56
Solyc03g033930.1.1	Tomato	cytosol	12.82	15.0
AT2G24840.1	Thale cress	nucleus	29.91	13.26
Solyc01g106700.2.1	Tomato	nucleus	23.08	12.68
Solyc04g064860.1.1	Tomato	plastid	24.79	12.45
Solyc01g106730.1.1	Tomato	mitochondrion	23.08	12.22
GSMUA_Achr5P01940_001	Banana	nucleus	23.08	11.07
Solyc01g060300.1.1	Tomato	nucleus	18.8	10.43
GSMUA_Achr5P01990_001	Banana	nucleus	26.5	8.93
Solyc06g065960.1.1	Tomato	nucleus	6.84	8.79
CDY34751	Canola	cytosol	2.56	2.65
CDX76788	Canola	cytosol	2.56	2.65
CDY45604	Canola	cytosol	0.0	0.0
CDY36150	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K4BR40	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc04g025970.1
EnsemblPlants:Solyc04g025970.1.1	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002765C48	:	:

Description

No Description!

Coordinates

chr4:+:20137320..20137673

Molecular Weight (calculated)

13334.1 Da

IEP (calculated)

10.162

GRAVY (calculated)

-0.487

Length

117 amino acids

Sequence
(BLAST)

001: MEGKKKAGCQ RIPLEKIEKK VARYASFFKR RLCLYKKASE LIQERDVDIG VFISSQTGKP YSFVHQTANV VINHFKSPTT IDLGAQFAGA EARNNVIQMN
101: DMLNDFDARE KVTKNHI

Best Arabidopsis Sequence Match ( AT3G04100.1 )
(BLAST)

001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA

Arabidopsis Description

AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.