Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g018110.1.1 | Tomato | nucleus | 95.8 | 61.96 |
| Solyc10g018080.1.1 | Tomato | cytosol | 70.59 | 55.63 |
| PGSC0003DMT400095917 | Potato | cytosol | 49.58 | 44.7 |
| PGSC0003DMT400097360 | Potato | cytosol | 48.74 | 43.94 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 39.5 | 40.17 |
| Solyc04g056740.1.1 | Tomato | nucleus | 56.3 | 37.22 |
| Solyc03g033570.1.1 | Tomato | nucleus | 54.62 | 35.71 |
| Solyc03g033890.1.1 | Tomato | nucleus | 40.34 | 34.29 |
| Solyc04g056550.1.1 | Tomato | nucleus | 52.1 | 34.07 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 15.97 | 33.93 |
| Solyc03g033900.1.1 | Tomato | nucleus | 50.42 | 32.79 |
| Solyc01g097850.1.1 | Tomato | nucleus | 47.06 | 32.56 |
| Solyc06g059780.1.1 | Tomato | nucleus | 47.06 | 31.11 |
| Solyc03g033880.1.1 | Tomato | cytosol | 47.06 | 30.43 |
| Solyc10g050900.1.1 | Tomato | nucleus | 42.86 | 30.18 |
| Solyc10g050950.1.1 | Tomato | nucleus | 40.34 | 29.81 |
| Solyc03g033940.1.1 | Tomato | nucleus | 47.06 | 29.79 |
| Solyc10g050940.1.1 | Tomato | nucleus | 42.02 | 29.59 |
| Solyc06g054680.1.1 | Tomato | nucleus | 44.54 | 29.44 |
| Solyc03g034260.1.1 | Tomato | nucleus | 45.38 | 29.35 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 50.42 | 27.91 |
| CDY26304 | Canola | nucleus | 32.77 | 21.08 |
| Solyc01g060310.1.1 | Tomato | nucleus, plastid | 24.37 | 20.86 |
| CDX99867 | Canola | nucleus | 33.61 | 20.62 |
| Bra032347.1-P | Field mustard | nucleus | 31.93 | 20.43 |
| Solyc04g025110.1.1 | Tomato | mitochondrion, nucleus, plastid | 21.85 | 20.0 |
| AT1G28460.1 | Thale cress | nucleus | 29.41 | 19.23 |
| Solyc01g106710.1.1 | Tomato | nucleus | 35.29 | 19.0 |
| Solyc11g069770.1.1 | Tomato | nucleus | 28.57 | 18.78 |
| Solyc01g106720.1.1 | Tomato | nucleus | 32.77 | 18.48 |
| AT1G29962.1 | Thale cress | nucleus | 28.57 | 18.38 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 37.82 | 18.29 |
| Solyc04g025030.1.1 | Tomato | mitochondrion | 20.17 | 17.78 |
| Solyc04g047870.1.1 | Tomato | mitochondrion, nucleus | 27.73 | 17.37 |
| AT1G28450.1 | Thale cress | nucleus | 26.89 | 17.3 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 35.29 | 17.21 |
| Solyc01g106700.2.1 | Tomato | nucleus | 27.73 | 15.49 |
| Solyc04g064860.1.1 | Tomato | plastid | 29.41 | 15.02 |
| Solyc01g106730.1.1 | Tomato | mitochondrion | 27.73 | 14.93 |
| Solyc03g033930.1.1 | Tomato | cytosol | 11.76 | 14.0 |
| Solyc01g060300.1.1 | Tomato | nucleus | 24.37 | 13.74 |
| AT1G54760.1 | Thale cress | nucleus | 16.81 | 12.42 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 31.09 | 10.66 |
| Solyc06g065960.1.1 | Tomato | nucleus | 5.88 | 7.69 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4CYT1 | PFAM:PF00319 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | EnsemblPlantsGene:Solyc10g018070.1 |
| EnsemblPlants:Solyc10g018070.1.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000276C583 | : | : |
Description
No Description!
Coordinates
chr10:+:6667747..6668301
Molecular Weight (calculated)
13064.6 Da
IEP (calculated)
10.143
GRAVY (calculated)
-0.439
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHKKTAGRQ KISLAKIENE SARLTKFSKR RSGLYKKACE LVRECDVDLG IVMSSLKGIP YSFSSPTSNV VIDRFINPTA NLSSSDRLVA VETRKKLENG
101: ASSSSQIPSD DANISPNVF
101: ASSSSQIPSD DANISPNVF
001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
Arabidopsis Description
AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.