Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra025607.1-P | |
| Bra025609.1-P | |
| Bra025619.1-P | |
| Bra034809.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29962.1 | Bra034809.1-P | AT2G40210.1 | 15805477 |
| AT1G29962.1 | Bra025607.1-P | AT5G38740.1 | 15805477 |
| AT1G29962.1 | Bra025609.1-P | AT5G38740.1 | 15805477 |
| AT1G29962.1 | Bra025619.1-P | AT5G38740.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26304 | Canola | nucleus | 97.31 | 97.84 |
| AT1G29962.1 | Thale cress | nucleus | 50.0 | 50.27 |
| AT1G28460.1 | Thale cress | nucleus | 47.85 | 48.9 |
| AT1G28450.1 | Thale cress | nucleus | 44.62 | 44.86 |
| AT1G54760.1 | Thale cress | nucleus | 36.02 | 41.61 |
| Solyc10g018070.1.1 | Tomato | nucleus | 20.43 | 31.93 |
| PGSC0003DMT400092871 | Potato | nucleus | 22.04 | 29.29 |
| Bra001209.1-P | Field mustard | nucleus | 26.88 | 27.93 |
| Bra032057.1-P | Field mustard | nucleus | 25.81 | 26.67 |
| Solyc03g033890.1.1 | Tomato | nucleus | 18.28 | 24.29 |
| PGSC0003DMT400095957 | Potato | cytosol | 16.67 | 24.03 |
| Solyc10g018110.1.1 | Tomato | nucleus | 23.66 | 23.91 |
| PGSC0003DMT400093117 | Potato | nucleus | 23.12 | 23.89 |
| Solyc10g018080.1.1 | Tomato | cytosol | 19.35 | 23.84 |
| Bra021910.1-P | Field mustard | nucleus | 23.12 | 23.63 |
| Solyc04g056740.1.1 | Tomato | nucleus | 22.58 | 23.33 |
| Solyc01g097850.1.1 | Tomato | nucleus | 21.51 | 23.26 |
| PGSC0003DMT400091428 | Potato | nucleus | 21.51 | 23.26 |
| PGSC0003DMT400087813 | Potato | nucleus | 22.58 | 23.08 |
| PGSC0003DMT400089966 | Potato | cytosol | 20.97 | 22.94 |
| PGSC0003DMT400094886 | Potato | nucleus | 22.04 | 22.78 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 30.11 | 22.76 |
| PGSC0003DMT400088968 | Potato | nucleus | 13.44 | 22.73 |
| Bra026764.1-P | Field mustard | nucleus | 20.43 | 22.62 |
| Solyc10g050900.1.1 | Tomato | nucleus | 20.43 | 22.49 |
| Solyc10g050950.1.1 | Tomato | nucleus | 19.35 | 22.36 |
| Solyc06g059780.1.1 | Tomato | nucleus | 21.51 | 22.22 |
| PGSC0003DMT400091277 | Potato | nucleus | 21.51 | 22.22 |
| Solyc04g056550.1.1 | Tomato | nucleus | 21.51 | 21.98 |
| PGSC0003DMT400095980 | Potato | nucleus | 20.43 | 21.97 |
| PGSC0003DMT400090103 | Potato | nucleus | 20.97 | 21.91 |
| PGSC0003DMT400093319 | Potato | nucleus | 20.97 | 21.91 |
| PGSC0003DMT400095190 | Potato | nucleus | 20.97 | 21.67 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 27.96 | 21.31 |
| Bra007829.1-P | Field mustard | nucleus | 23.66 | 21.26 |
| Solyc06g054680.1.1 | Tomato | nucleus | 20.43 | 21.11 |
| Solyc03g033570.1.1 | Tomato | nucleus | 20.43 | 20.88 |
| Solyc03g033900.1.1 | Tomato | nucleus | 20.43 | 20.77 |
| Solyc10g050940.1.1 | Tomato | nucleus | 18.82 | 20.71 |
| Solyc03g033880.1.1 | Tomato | cytosol | 20.43 | 20.65 |
| Solyc03g033940.1.1 | Tomato | nucleus | 20.43 | 20.21 |
| PGSC0003DMT400093647 | Potato | nucleus | 15.59 | 20.14 |
| PGSC0003DMT400088611 | Potato | nucleus | 17.74 | 20.0 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 22.58 | 19.53 |
| PGSC0003DMT400094043 | Potato | cytosol | 15.05 | 18.79 |
| Bra026674.1-P | Field mustard | nucleus | 20.43 | 18.45 |
| PGSC0003DMT400090655 | Potato | cytosol | 17.2 | 18.39 |
| Bra020242.1-P | Field mustard | nucleus | 23.66 | 17.74 |
| Solyc03g034260.1.1 | Tomato | nucleus | 17.2 | 17.39 |
| Bra011938.1-P | Field mustard | nucleus | 22.04 | 17.23 |
| Bra003884.1-P | Field mustard | cytosol | 18.82 | 16.51 |
| Bra022434.1-P | Field mustard | nucleus | 24.19 | 15.9 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 29.57 | 15.85 |
| Bra002480.1-P | Field mustard | nucleus | 23.66 | 15.77 |
| PGSC0003DMT400088010 | Potato | cytosol | 12.9 | 14.91 |
| PGSC0003DMT400097360 | Potato | cytosol | 10.22 | 14.39 |
| Bra038225.1-P | Field mustard | nucleus | 19.35 | 13.79 |
| PGSC0003DMT400089582 | Potato | cytosol | 11.83 | 13.66 |
| PGSC0003DMT400095917 | Potato | cytosol | 9.68 | 13.64 |
| Bra020247.1-P | Field mustard | cytosol | 19.35 | 13.38 |
| PGSC0003DMT400097679 | Potato | cytosol | 8.6 | 12.5 |
| PGSC0003DMT400027289 | Potato | cytosol | 8.06 | 11.63 |
| Solyc03g033930.1.1 | Tomato | cytosol | 5.91 | 11.0 |
| Bra035685.1-P | Field mustard | nucleus | 17.2 | 10.92 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 4.3 | 7.77 |
| Bra020245.1-P | Field mustard | nucleus | 5.38 | 7.14 |
| Solyc06g065960.1.1 | Tomato | nucleus | 3.23 | 6.59 |
| Bra020246.1-P | Field mustard | cytosol | 5.91 | 6.47 |
| Bra022446.1-P | Field mustard | cytosol | 5.91 | 5.61 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EnsemblPlantsGene:Bra032347 | EnsemblPlants:Bra032347.1 | EnsemblPlants:Bra032347.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR036879 | UniProt:M4EU65 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000254262E |
| SEG:seg | : | : | : | : | : |
Description
AT1G29962 (E=9e-033) AGL64 | AGL64 (AGAMOUS-LIKE 64); transcription factor
Coordinates
chrA09:-:22377033..22377593
Molecular Weight (calculated)
20769.7 Da
IEP (calculated)
8.764
GRAVY (calculated)
-0.629
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKKTRGRQ KIDIKKVTKN EDRIITFSKR KNGIYTKLSE LSILCGADVG FLIYSGSGKP FTFGSPSFDD VAQRFLHGNH HSGIINGEGN SSSSSLIVDA
101: HKKVKMDEFC KNLNNLMEIK TAAEEEKLKM AEPAYAPSLP VKSTDEEEKQ LLRRYEEYYE ELCEVAAAKI RGRYDVPASS SFPQHG
101: HKKVKMDEFC KNLNNLMEIK TAAEEEKLKM AEPAYAPSLP VKSTDEEEKQ LLRRYEEYYE ELCEVAAAKI RGRYDVPASS SFPQHG
001: MKPKKTKGKQ RINIKKIEKD EDRLVTLSKR RNGIYTKLSE LSILCGAEVA FLGYSCSGKP YTFGSPSFQA VAERFLNGEA SSSSSSSLQR SVMNAHQQAK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
Arabidopsis Description
AGL64AGAMOUS-like 64 [Source:UniProtKB/TrEMBL;Acc:Q7XJK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.