Factsheet for Bra022434.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46165	Canola	nucleus	96.82	96.82
Bra022446.1-P	Field mustard	cytosol	58.66	84.69
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	13.43	67.86
Bra038225.1-P	Field mustard	nucleus	61.84	67.05
VIT_01s0010g01500.t01	Wine grape	nucleus	20.85	57.28
KRH22644	Soybean	nucleus	24.73	50.36
VIT_03s0088g00550.t01	Wine grape	nucleus	35.34	46.95
VIT_03s0088g00510.t01	Wine grape	nucleus	37.1	46.88
PGSC0003DMT400013136	Potato	nucleus	32.16	46.19
VIT_03s0088g00600.t01	Wine grape	nucleus	34.28	45.33
KRH32901	Soybean	nucleus	26.86	43.93
KRH32912	Soybean	nucleus	26.86	43.93
Bra032057.1-P	Field mustard	nucleus	27.92	43.89
KRH72042	Soybean	extracellular	15.9	43.69
Bra026764.1-P	Field mustard	nucleus	25.8	43.45
KRH32910	Soybean	nucleus	27.21	43.26
KRH32917	Soybean	nucleus	27.21	43.26
KRH32909	Soybean	nucleus	26.15	42.77
KRG88448	Soybean	nucleus	26.15	42.77
KRH32946	Soybean	nucleus	26.15	42.77
KRH33030	Soybean	nucleus	16.96	42.48
KRH32916	Soybean	nucleus	25.8	42.2
KRH32915	Soybean	nucleus	25.8	42.2
KRH32904	Soybean	nucleus	25.8	42.2
KRH32900	Soybean	nucleus	25.44	41.62
KRG91147	Soybean	nucleus	34.28	40.59
KRH72149	Soybean	mitochondrion	24.03	40.24
KRG91148	Soybean	nucleus	34.28	40.08
KRH35628	Soybean	nucleus	34.63	39.68
Bra007829.1-P	Field mustard	nucleus	28.98	39.61
KRH71935	Soybean	nucleus	24.73	39.55
Bra020242.1-P	Field mustard	nucleus	34.63	39.52
Bra002480.1-P	Field mustard	nucleus	38.87	39.43
Bra020247.1-P	Field mustard	cytosol	36.4	38.29
KRH32873	Soybean	nucleus	28.98	37.79
Bra011938.1-P	Field mustard	nucleus	31.1	36.97
KRH28025	Soybean	nucleus	21.2	35.71
KRG91149	Soybean	mitochondrion	29.33	34.3
Bra021910.1-P	Field mustard	nucleus	21.55	33.52
Bra020245.1-P	Field mustard	nucleus	15.9	32.14
Bra001209.1-P	Field mustard	nucleus	20.14	31.84
KRH35627	Soybean	mitochondrion	27.56	31.58
KRH72146	Soybean	nucleus	20.14	30.0
Bra020246.1-P	Field mustard	cytosol	18.02	30.0
KRH35629	Soybean	nucleus	21.91	29.38
KRH32908	Soybean	nucleus	9.19	28.89
Bra035685.1-P	Field mustard	nucleus	28.62	27.65
GSMUA_Achr4P28260_001	Banana	nucleus	21.91	25.2
GSMUA_Achr5P01940_001	Banana	nucleus	21.2	24.59
Bra032347.1-P	Field mustard	nucleus	15.9	24.19
Bra026674.1-P	Field mustard	nucleus	16.96	23.3
Bra003884.1-P	Field mustard	cytosol	17.31	23.11
GSMUA_Achr5P01990_001	Banana	nucleus	23.67	19.31

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra022434	EnsemblPlants:Bra022434.1	EnsemblPlants:Bra022434.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4E0Y7	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002547DB5	SEG:seg	:	:

Description

AT5G60440 (E=3e-072) AGL62 | AGL62 (Agamous-like 62); DNA binding / transcription factor

Coordinates

chrA05:+:17722114..17723438

Molecular Weight (calculated)

32407.4 Da

IEP (calculated)

8.574

GRAVY (calculated)

-0.702

Length

283 amino acids

Sequence
(BLAST)

001: MVKKSKGRQK IEMVKMKNEN NLQVTFSKRR NGLFKKASEL CTLCGVEIVV IVFSPGKKVF SFGHPNVDCV IDRFTNINPP HPRQHTDTQL SEAHRNAIIQ
101: DLNSHLTQVT EEFEIEKKRA EDLKKKRKNS YISDNWWEEP IKELNLSQLT EFKCGLEKLR KTVTTEASKN FQTIVPRHNF DGGSSNNATF GICDDHAGNI
201: DTNLDLYNHQ RMVATNTFAC NHHNMMVPYH ITTPFGNIGN GNIIEGFAAE YNQNPNHLCF KKEHISGCDH HSVHPPRFGH GYY

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.