Factsheet for Bra021910.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G34440.1	Thale cress	nucleus	72.53	76.74
Bra001209.1-P	Field mustard	nucleus	52.2	53.07
PGSC0003DMT400090264	Potato	mitochondrion	30.22	36.18
KRH41505	Soybean	cytosol, nucleus, plastid	30.77	34.78
KRH60216	Soybean	nucleus	34.07	33.51
KRG99424	Soybean	nucleus	32.97	32.97
PGSC0003DMT400097162	Potato	nucleus	29.67	32.73
KRH60217	Soybean	nucleus	30.77	31.64
KRH41503	Soybean	nucleus	27.47	31.25
KRH45604	Soybean	nucleus	32.42	31.22
PGSC0003DMT400088636	Potato	mitochondrion	19.78	30.77
Bra032057.1-P	Field mustard	nucleus	30.22	30.56
PGSC0003DMT400097714	Potato	mitochondrion	24.18	29.33
PGSC0003DMT400016092	Potato	mitochondrion	31.32	28.93
Bra026764.1-P	Field mustard	nucleus	26.37	28.57
Solyc01g060310.1.1	Tomato	nucleus, plastid	21.43	28.06
PGSC0003DMT400097135	Potato	mitochondrion	29.12	28.04
VIT_00s0386g00010.t01	Wine grape	nucleus	30.77	27.59
PGSC0003DMT400086619	Potato	nucleus	28.02	27.42
PGSC0003DMT400092385	Potato	mitochondrion	28.57	26.4
Bra007829.1-P	Field mustard	nucleus	29.67	26.09
PGSC0003DMT400094407	Potato	mitochondrion	29.67	25.59
PGSC0003DMT400094024	Potato	golgi, mitochondrion	24.73	24.59
Bra032347.1-P	Field mustard	nucleus	23.63	23.12
Bra020242.1-P	Field mustard	nucleus	30.77	22.58
GSMUA_Achr5P01940_001	Banana	nucleus	29.12	21.72
Bra022434.1-P	Field mustard	nucleus	33.52	21.55
Bra002480.1-P	Field mustard	nucleus	32.97	21.51
Bra038225.1-P	Field mustard	nucleus	30.22	21.07
GSMUA_Achr4P28260_001	Banana	nucleus	27.47	20.33
Bra011938.1-P	Field mustard	nucleus	26.37	20.17
Bra020247.1-P	Field mustard	cytosol	29.12	19.7
Solyc01g060300.1.1	Tomato	nucleus	22.53	19.43
Bra003884.1-P	Field mustard	cytosol	22.53	19.34
Bra026674.1-P	Field mustard	nucleus	21.43	18.93
PGSC0003DMT400086182	Potato	cytosol	12.09	17.19
PGSC0003DMT400092220	Potato	cytosol	11.54	16.41
Bra035685.1-P	Field mustard	nucleus	25.82	16.04
PGSC0003DMT400090145	Potato	nucleus	12.64	15.23
GSMUA_Achr5P01990_001	Banana	nucleus	28.02	14.7
Bra020245.1-P	Field mustard	nucleus	10.44	13.57
Bra020246.1-P	Field mustard	cytosol	12.64	13.53
Bra022446.1-P	Field mustard	cytosol	10.99	10.2

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra021910	EnsemblPlants:Bra021910.1	EnsemblPlants:Bra021910.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	UniProt:M4DZG3	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025438C6
SEG:seg	:	:	:	:	:

Description

AT2G34440 (E=6e-066) AGL29 | AGL29 (AGAMOUS-LIKE 29); transcription factor

Coordinates

chrA04:+:15161779..15162327

Molecular Weight (calculated)

20763.7 Da

IEP (calculated)

5.567

GRAVY (calculated)

-0.980

Length

182 amino acids

Sequence
(BLAST)

001: MGRKKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPYSYGKP NLDAVTERFM RECDDDSDSG DDEEEEEERG KSRPKMKKVN
101: ERLDCLKREI EAEKKRGEER QAKLESAGDE RFEKPIEKLT IDELKEYMDK LEAVHGRIQG QANKMQASSC LVFLSGDKAS VE

Best Arabidopsis Sequence Match ( AT2G34440.1 )
(BLAST)

001: MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP NLDSVAERFM REYDDSDSGD EEKSGNYRPK LKRLSERLDL
101: LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH GRIEGQVNHL QASSCLMLLS RK

Arabidopsis Description

AGL29AGL29 [Source:UniProtKB/TrEMBL;Acc:A0A178VU29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.