Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21751 | Canola | nucleus | 99.51 | 99.51 |
| CDX81816 | Canola | nucleus | 96.6 | 96.6 |
| AT1G17310.2 | Thale cress | nucleus | 71.36 | 64.47 |
| Bra003884.1-P | Field mustard | cytosol | 46.6 | 45.28 |
| GSMUA_Achr4P11900_001 | Banana | nucleus | 23.79 | 33.56 |
| Os12t0407000-00 | Rice | mitochondrion | 30.58 | 32.47 |
| Os06t0504100-00 | Rice | mitochondrion | 30.58 | 30.0 |
| TraesCS1B01G080200.1 | Wheat | nucleus | 24.76 | 28.65 |
| TraesCS5B01G471900.1 | Wheat | mitochondrion | 23.3 | 27.75 |
| Bra032057.1-P | Field mustard | nucleus | 23.79 | 27.22 |
| TraesCS1D01G062500.1 | Wheat | nucleus | 23.79 | 27.07 |
| KXG20143 | Sorghum | nucleus | 23.79 | 26.63 |
| TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 22.33 | 26.59 |
| Zm00001d007891_P001 | Maize | nucleus | 24.76 | 26.56 |
| KXG21744 | Sorghum | nucleus | 25.24 | 26.13 |
| Zm00001d042550_P001 | Maize | nucleus | 23.79 | 26.06 |
| TraesCS7D01G337200.1 | Wheat | plastid | 24.27 | 25.91 |
| TraesCS1A01G013100.1 | Wheat | nucleus | 23.3 | 25.4 |
| TraesCS7B01G240500.1 | Wheat | plastid | 23.79 | 25.39 |
| TraesCS7A01G342300.1 | Wheat | plastid | 24.27 | 25.38 |
| HORVU7Hr1G081190.1 | Barley | nucleus | 18.45 | 25.33 |
| EER88419 | Sorghum | nucleus | 26.21 | 25.12 |
| TraesCS7A01G342600.1 | Wheat | nucleus, plastid | 23.79 | 24.87 |
| HORVU5Hr1G110410.2 | Barley | nucleus | 23.3 | 24.74 |
| TraesCS1A01G061800.1 | Wheat | nucleus | 20.39 | 24.56 |
| TraesCS7B01G211300.1 | Wheat | plastid | 23.3 | 24.49 |
| TraesCS7D01G337000.1 | Wheat | plastid | 23.3 | 24.49 |
| TraesCS7B01G240400.1 | Wheat | plastid | 22.82 | 23.98 |
| VIT_07s0005g06590.t01 | Wine grape | nucleus | 24.27 | 23.81 |
| VIT_10s0003g03970.t01 | Wine grape | nucleus | 24.27 | 23.81 |
| EER89159 | Sorghum | nucleus | 26.21 | 23.58 |
| PGSC0003DMT400002920 | Potato | nucleus | 19.9 | 23.3 |
| Bra026764.1-P | Field mustard | nucleus | 18.93 | 23.21 |
| Bra007829.1-P | Field mustard | nucleus | 22.82 | 22.71 |
| Zm00001d046054_P001 | Maize | mitochondrion, plastid | 26.7 | 22.36 |
| Zm00001d046053_P001 | Maize | mitochondrion, plastid | 26.7 | 22.36 |
| Solyc11g069770.1.1 | Tomato | nucleus | 18.93 | 21.55 |
| Bra021910.1-P | Field mustard | nucleus | 18.93 | 21.43 |
| Bra001209.1-P | Field mustard | nucleus | 18.45 | 21.23 |
| Bra032347.1-P | Field mustard | nucleus | 18.45 | 20.43 |
| HORVU5Hr1G110470.1 | Barley | plastid | 23.79 | 19.76 |
| HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 24.27 | 18.73 |
| Bra002480.1-P | Field mustard | nucleus | 24.27 | 17.92 |
| KRH06269 | Soybean | nucleus | 21.84 | 17.72 |
| Bra011938.1-P | Field mustard | nucleus | 20.39 | 17.65 |
| KRH47706 | Soybean | nucleus | 21.84 | 17.65 |
| Bra022434.1-P | Field mustard | nucleus | 23.3 | 16.96 |
| KRH47701 | Soybean | nucleus | 23.3 | 16.9 |
| KRH47704 | Soybean | nucleus | 22.33 | 16.03 |
| Bra038225.1-P | Field mustard | nucleus | 18.93 | 14.94 |
| Bra020242.1-P | Field mustard | nucleus | 17.48 | 14.52 |
| Bra020247.1-P | Field mustard | cytosol | 16.99 | 13.01 |
| Bra035685.1-P | Field mustard | nucleus | 17.48 | 12.29 |
| Bra022446.1-P | Field mustard | cytosol | 5.34 | 5.61 |
| Bra020246.1-P | Field mustard | cytosol | 3.4 | 4.12 |
| Bra020245.1-P | Field mustard | nucleus | 2.43 | 3.57 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EnsemblPlantsGene:Bra026674 | EnsemblPlants:Bra026674.1 | EnsemblPlants:Bra026674.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| UniProt:M4ED14 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF164 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002542BB9 | SEG:seg |
Description
AT1G17310 (E=1e-064) | MADS-box protein (AGL100)
Coordinates
chrA09:+:33159301..33159921
Molecular Weight (calculated)
23590.6 Da
IEP (calculated)
9.942
GRAVY (calculated)
-0.693
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVRQTLPT TFLKPNEQFQ NPNVLVTQTK KELTKPRNPK TSRGRQKIEI KEIKEDSKRH VTFSKRRRGL FKKAAELSVL TGAKIAVVTF SKCGRIYSFG
101: HVDSLMDKYL RKIPVNLEVY SGDDSAEEGG RPWWERPVES VPEEELEEYI MAMSVLRDKL GKKINDMGSI VPAWPINMMG WKPQMDMQSM GDVTDGVNRC
201: RLGQNG
101: HVDSLMDKYL RKIPVNLEVY SGDDSAEEGG RPWWERPVES VPEEELEEYI MAMSVLRDKL GKKINDMGSI VPAWPINMMG WKPQMDMQSM GDVTDGVNRC
201: RLGQNG
001: MKDLFMEGER ETSSMTCLTP KDSVQSPNML VRQPKKETTT QTPKTTRGRQ KIEIKKIEEE TKRQVTFSKR RRGLFKKSAE LSVLTGAKIA VITFSKCDRI
101: YRFGHVDALI DKYLRKSPVK LEGYSGDNAA DEESRRPWWE RPVESVPEEE LEEYMAALSM LRENIGKKIV AMGNDRTVDM VPAWPINVMG WKPTMDMQKL
201: ENLTDGVNRC RVGQNGD
101: YRFGHVDALI DKYLRKSPVK LEGYSGDNAA DEESRRPWWE RPVESVPEEE LEEYMAALSM LRENIGKKIV AMGNDRTVDM VPAWPINVMG WKPTMDMQKL
201: ENLTDGVNRC RVGQNGD
Arabidopsis Description
MADS-box transcription factor family protein [Source:TAIR;Acc:AT1G17310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.