Factsheet for Os12t0407000-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0504100-00	Rice	mitochondrion	59.28	54.76
TraesCS5B01G471900.1	Wheat	mitochondrion	46.91	52.6
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	44.85	50.29
TraesCS1B01G080200.1	Wheat	nucleus	44.85	48.88
HORVU7Hr1G081190.1	Barley	nucleus	37.63	48.67
TraesCS1D01G062500.1	Wheat	nucleus	45.36	48.62
KXG20143	Sorghum	nucleus	45.36	47.83
TraesCS7D01G337200.1	Wheat	plastid	47.42	47.67
TraesCS7B01G240400.1	Wheat	plastid	46.91	46.43
TraesCS7A01G342600.1	Wheat	nucleus, plastid	46.91	46.19
TraesCS7B01G240500.1	Wheat	plastid	45.88	46.11
TraesCS7D01G337000.1	Wheat	plastid	46.39	45.92
TraesCS7B01G211300.1	Wheat	plastid	46.39	45.92
TraesCS7A01G342300.1	Wheat	plastid	46.39	45.69
TraesCS1A01G061800.1	Wheat	nucleus	40.21	45.61
HORVU5Hr1G110410.2	Barley	nucleus	45.36	45.36
Zm00001d007891_P001	Maize	nucleus	43.81	44.27
Zm00001d042550_P001	Maize	nucleus	42.27	43.62
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	13.4	42.62
KXG21744	Sorghum	nucleus	41.75	40.7
EER88419	Sorghum	nucleus	43.3	39.07
EER89159	Sorghum	nucleus	44.85	37.99
HORVU5Hr1G110470.1	Barley	plastid	47.42	37.1
GSMUA_Achr4P11900_001	Banana	nucleus	26.8	35.62
Zm00001d046054_P001	Maize	mitochondrion, plastid	43.81	34.55
Zm00001d046053_P001	Maize	mitochondrion, plastid	43.81	34.55
Os01t0975800-00	Rice	nucleus	35.57	33.17
HORVU7Hr1G081070.1	Barley	mitochondrion, nucleus	45.36	32.96
Os09t0116800-00	Rice	mitochondrion	34.02	31.43
Bra026674.1-P	Field mustard	nucleus	32.47	30.58
CDX81816	Canola	nucleus	31.96	30.1
CDY21751	Canola	nucleus	31.96	30.1
AT1G17310.2	Thale cress	nucleus	32.99	28.07
CDX72908	Canola	nucleus	29.38	26.76
CDY50644	Canola	cytosol, mitochondrion, nucleus	28.87	26.42
CDX68270	Canola	cytosol, nucleus, plastid	28.87	26.42
Bra003884.1-P	Field mustard	cytosol	28.35	25.94
Solyc11g069770.1.1	Tomato	nucleus	23.71	25.41
VIT_07s0005g06590.t01	Wine grape	nucleus	25.26	23.33
VIT_10s0003g03970.t01	Wine grape	nucleus	25.26	23.33
AT1G72350.1	Thale cress	nucleus	26.8	23.21
PGSC0003DMT400002920	Potato	nucleus	20.1	22.16
KRH47706	Soybean	nucleus	24.23	18.43
KRH06269	Soybean	nucleus	23.2	17.72
KRH47704	Soybean	nucleus	24.74	16.72
KRH47701	Soybean	nucleus	22.68	15.49

Protein Annotations

EntrezGene:107277330	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:ABA97557.1	ProteinID:BAT16836.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	EnsemblPlantsGene:Os12g0407000	EnsemblPlants:Os12t0407000-00	PFAM:PF00319	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF339	UniProt:Q2QT50	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0000681420	RefSeq:XP_015619582.1	SEG:seg

Description

MADS BOX GENE 73Similar to SRF-type transcription factor family protein, expressed. (Os12t0407000-00)

Coordinates

chr12:-:12303450..12304062

Molecular Weight (calculated)

21195.6 Da

IEP (calculated)

11.297

GRAVY (calculated)

-0.275

Length

194 amino acids

Sequence
(BLAST)

001: MVHPLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVVVFSPA KHVYAFGHPS VDAVLRSYAS VPGEAAAVAP VPVHGGSGGE
101: DVDLLGLRLA ADDTGAQVAA EHARMRDVAA RIVQAKAGRR FWWEADVDAL GEAELLEFFT ALKKLRDNVG RHANALLAPQ PPPLPLQQKQ RRRR

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.