Factsheet for TraesCS1A01G061800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G062500.1	Wheat	nucleus	86.55	81.77
TraesCS1B01G080200.1	Wheat	nucleus	83.63	80.34
HORVU7Hr1G081190.1	Barley	nucleus	60.82	69.33
TraesCS7A01G342600.1	Wheat	nucleus, plastid	74.27	64.47
TraesCS7A01G342300.1	Wheat	plastid	72.51	62.94
Os06t0504100-00	Rice	mitochondrion	49.71	40.48
Os12t0407000-00	Rice	mitochondrion	45.61	40.21
TraesCS1A01G013100.1	Wheat	nucleus	37.43	33.86
GSMUA_Achr4P11900_001	Banana	nucleus	20.47	23.97
TraesCS6A01G338400.1	Wheat	nucleus	34.5	23.51
TraesCS3A01G535200.1	Wheat	nucleus	35.09	23.08
TraesCS6A01G138300.1	Wheat	nucleus	26.32	22.84
CDX72908	Canola	nucleus	26.9	21.6
VIT_10s0003g03970.t01	Wine grape	nucleus	26.32	21.43
VIT_07s0005g06590.t01	Wine grape	nucleus	25.15	20.48
Bra026674.1-P	Field mustard	nucleus	24.56	20.39
CDY21751	Canola	nucleus	23.98	19.9
CDX81816	Canola	nucleus	23.98	19.9
AT1G17310.2	Thale cress	nucleus	24.56	18.42
CDY50644	Canola	cytosol, mitochondrion, nucleus	22.81	18.4
CDX68270	Canola	cytosol, nucleus, plastid	22.81	18.4
Bra003884.1-P	Field mustard	cytosol	22.22	17.92
AT1G72350.1	Thale cress	nucleus	23.39	17.86
KRH06269	Soybean	nucleus	25.73	17.32
Solyc11g069770.1.1	Tomato	nucleus	18.13	17.13
KRH47706	Soybean	nucleus	25.15	16.86
PGSC0003DMT400002920	Potato	nucleus	16.96	16.48
KRH47701	Soybean	nucleus	26.32	15.85
KRH47704	Soybean	nucleus	25.15	14.98
TraesCS3A01G359300.1	Wheat	nucleus	28.07	14.59
TraesCS5A01G010400.1	Wheat	nucleus	18.71	10.49
TraesCS3A01G454500.1	Wheat	nucleus	18.13	9.94
TraesCS3A01G527400.1	Wheat	nucleus	22.81	9.77

Protein Annotations

EnsemblPlants:TraesCS1A01G061800.1	EnsemblPlantsGene:TraesCS1A01G061800	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	PANTHER:PTHR11945	PANTHER:PTHR11945:SF339	PFAM:PF00319	PFscan:PS50066	PRINTS:PR00404
SEG:seg	SMART:SM00432	SUPFAM:SSF55455	MapMan:15.5.14	:	:

Description

No Description!

Coordinates

chr1A:-:42278951..42280282

Molecular Weight (calculated)

18982.4 Da

IEP (calculated)

5.866

GRAVY (calculated)

-0.367

Length

171 amino acids

Sequence
(BLAST)

001: MKGCQCRENR LVEDRESRQV TFSKRKSGIW KKASELALPC RASLTVVVFS EAGKGFAFGS PSTDAVLAYT GYGDTNAHPA ATDDVEWEAL EALCRETEKK
101: GVEVVVEAAR MSVVGKKVVD VQTQVGRWFW WEADVEALGE AELPEFARAL QHLRDNVRRR ADNLVSALPP Q

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.