Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plasma membrane | 5.48 | 72.73 |
| TraesCS1A01G013100.1 | Wheat | nucleus | 34.93 | 26.98 |
| Os12t0407000-00 | Rice | mitochondrion | 35.62 | 26.8 |
| TraesCS5B01G471900.1 | Wheat | mitochondrion | 29.45 | 24.86 |
| VIT_10s0003g03970.t01 | Wine grape | nucleus | 35.62 | 24.76 |
| EER88419 | Sorghum | nucleus | 36.3 | 24.65 |
| Zm00001d042550_P001 | Maize | nucleus | 31.51 | 24.47 |
| KXG20143 | Sorghum | nucleus | 30.82 | 24.46 |
| VIT_07s0005g06590.t01 | Wine grape | nucleus | 34.93 | 24.29 |
| CDY21751 | Canola | nucleus | 34.25 | 24.27 |
| Zm00001d007891_P001 | Maize | nucleus | 31.51 | 23.96 |
| Os06t0504100-00 | Rice | mitochondrion | 34.25 | 23.81 |
| Bra026674.1-P | Field mustard | nucleus | 33.56 | 23.79 |
| TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 28.08 | 23.7 |
| GSMUA_Achr8P07230_001 | Banana | nucleus | 37.67 | 23.31 |
| CDX81816 | Canola | nucleus | 32.88 | 23.3 |
| GSMUA_Achr5P26530_001 | Banana | mitochondrion, nucleus, plastid | 35.62 | 23.11 |
| HORVU7Hr1G081190.1 | Barley | nucleus | 23.29 | 22.67 |
| TraesCS1B01G080200.1 | Wheat | nucleus | 27.4 | 22.47 |
| PGSC0003DMT400002920 | Potato | nucleus | 26.71 | 22.16 |
| KXG21744 | Sorghum | nucleus | 30.14 | 22.11 |
| Solyc11g069770.1.1 | Tomato | nucleus | 27.4 | 22.1 |
| TraesCS1D01G062500.1 | Wheat | nucleus | 27.4 | 22.1 |
| HORVU5Hr1G110410.2 | Barley | nucleus | 28.77 | 21.65 |
| Zm00001d046054_P001 | Maize | mitochondrion, plastid | 36.3 | 21.54 |
| Zm00001d046053_P001 | Maize | mitochondrion, plastid | 36.3 | 21.54 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 30.82 | 21.23 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 30.82 | 21.23 |
| AT1G17310.2 | Thale cress | nucleus | 32.88 | 21.05 |
| Bra003884.1-P | Field mustard | cytosol | 30.14 | 20.75 |
| EER89159 | Sorghum | nucleus | 32.19 | 20.52 |
| TraesCS1A01G061800.1 | Wheat | nucleus | 23.97 | 20.47 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 34.25 | 20.33 |
| TraesCS7D01G337000.1 | Wheat | plastid | 26.71 | 19.9 |
| TraesCS7B01G211300.1 | Wheat | plastid | 26.71 | 19.9 |
| TraesCS7B01G240400.1 | Wheat | plastid | 26.71 | 19.9 |
| TraesCS7A01G342300.1 | Wheat | plastid | 26.71 | 19.8 |
| TraesCS7D01G337200.1 | Wheat | plastid | 26.03 | 19.69 |
| TraesCS7B01G240500.1 | Wheat | plastid | 26.03 | 19.69 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 32.88 | 19.67 |
| AT1G72350.1 | Thale cress | nucleus | 30.14 | 19.64 |
| TraesCS7A01G342600.1 | Wheat | nucleus, plastid | 26.03 | 19.29 |
| CDX72908 | Canola | nucleus | 28.08 | 19.25 |
| KRH47706 | Soybean | nucleus | 30.82 | 17.65 |
| HORVU5Hr1G110470.1 | Barley | plastid | 28.77 | 16.94 |
| KRH06269 | Soybean | nucleus | 29.45 | 16.93 |
| KRH47704 | Soybean | nucleus | 30.82 | 15.68 |
| KRH47701 | Soybean | nucleus | 30.14 | 15.49 |
| HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 26.71 | 14.61 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 30.82 | 12.97 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr4G11900_001 | EnsemblPlants:GSMUA_Achr4P11900_001 | EnsemblPlants:GSMUA_Achr4T11900_001 | InterPro:IPR002100 |
| InterPro:IPR036879 | UniProt:M0SN55 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | TMHMM:TMhelix |
| UniParc:UPI0002967F48 | SEG:seg | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G11900_001]
Coordinates
chr4:-:8683300..8683740
Molecular Weight (calculated)
16271.9 Da
IEP (calculated)
11.035
GRAVY (calculated)
-0.327
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVKSKRT SRGRQKIRIK KIENPERRAV TFSKRRKGLF VMAAELCAHT GAHAAVIVFS PSGRPYAYSY PSVDEVLRRF LVGQFRDRAG LGGMQELVQM
101: RALLLGEGDE RAAEPHRGAV LEELQRGVEE LEKLRRLVLA KADVVG
101: RALLLGEGDE RAAEPHRGAV LEELQRGVEE LEKLRRLVLA KADVVG
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.