Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68270 | Canola | cytosol, nucleus, plastid | 96.7 | 96.7 |
| CDX72908 | Canola | nucleus | 67.45 | 67.14 |
| AT1G72350.1 | Thale cress | nucleus | 66.51 | 62.95 |
| CDX81816 | Canola | nucleus | 46.23 | 47.57 |
| CDY21751 | Canola | nucleus | 45.28 | 46.6 |
| CDY36151 | Canola | nucleus | 18.87 | 45.45 |
| GSMUA_Achr4P11900_001 | Banana | nucleus | 21.23 | 30.82 |
| Os12t0407000-00 | Rice | mitochondrion | 26.42 | 28.87 |
| CDY71457 | Canola | nucleus | 16.51 | 28.23 |
| CDY69485 | Canola | nucleus | 16.04 | 27.42 |
| Os06t0504100-00 | Rice | mitochondrion | 26.89 | 27.14 |
| TraesCS1B01G080200.1 | Wheat | nucleus | 22.17 | 26.4 |
| KXG20143 | Sorghum | nucleus | 22.64 | 26.09 |
| Zm00001d007891_P001 | Maize | nucleus | 23.58 | 26.04 |
| TraesCS5B01G471900.1 | Wheat | mitochondrion | 21.23 | 26.01 |
| Zm00001d042550_P001 | Maize | nucleus | 22.64 | 25.53 |
| TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 20.75 | 25.43 |
| HORVU7Hr1G081190.1 | Barley | nucleus | 17.92 | 25.33 |
| KXG21744 | Sorghum | nucleus | 23.58 | 25.13 |
| TraesCS1D01G062500.1 | Wheat | nucleus | 21.23 | 24.86 |
| TraesCS7D01G337200.1 | Wheat | plastid | 22.17 | 24.35 |
| TraesCS7A01G342300.1 | Wheat | plastid | 22.17 | 23.86 |
| TraesCS7B01G240500.1 | Wheat | plastid | 21.7 | 23.83 |
| TraesCS1A01G013100.1 | Wheat | nucleus | 21.23 | 23.81 |
| HORVU5Hr1G110410.2 | Barley | nucleus | 21.7 | 23.71 |
| TraesCS7D01G337000.1 | Wheat | plastid | 21.7 | 23.47 |
| TraesCS7B01G211300.1 | Wheat | plastid | 21.7 | 23.47 |
| TraesCS7A01G342600.1 | Wheat | nucleus, plastid | 21.7 | 23.35 |
| TraesCS7B01G240400.1 | Wheat | plastid | 21.23 | 22.96 |
| TraesCS1A01G061800.1 | Wheat | nucleus | 18.4 | 22.81 |
| VIT_10s0003g03970.t01 | Wine grape | nucleus | 22.17 | 22.38 |
| VIT_07s0005g06590.t01 | Wine grape | nucleus | 22.17 | 22.38 |
| CDX74094 | Canola | nucleus | 18.87 | 22.35 |
| CDX81713 | Canola | nucleus | 16.98 | 22.22 |
| CDY57614 | Canola | nucleus | 18.4 | 21.79 |
| CDY55987 | Canola | nucleus | 16.98 | 21.43 |
| EER89159 | Sorghum | nucleus | 23.11 | 21.4 |
| EER88419 | Sorghum | nucleus | 21.23 | 20.93 |
| PGSC0003DMT400002920 | Potato | nucleus | 16.98 | 20.45 |
| CDX99867 | Canola | nucleus | 18.4 | 20.1 |
| Zm00001d046054_P001 | Maize | mitochondrion, plastid | 23.11 | 19.92 |
| Zm00001d046053_P001 | Maize | mitochondrion, plastid | 23.11 | 19.92 |
| CDY26304 | Canola | nucleus | 16.98 | 19.46 |
| Solyc11g069770.1.1 | Tomato | nucleus | 16.51 | 19.34 |
| HORVU5Hr1G110470.1 | Barley | plastid | 21.7 | 18.55 |
| CDY24623 | Canola | nucleus | 24.53 | 18.37 |
| HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 22.17 | 17.6 |
| CDX95426 | Canola | nucleus | 22.64 | 17.39 |
| CDY42198 | Canola | nucleus | 22.64 | 17.39 |
| CDY46165 | Canola | nucleus | 23.11 | 17.31 |
| CDY09199 | Canola | nucleus | 19.81 | 16.94 |
| CDY31547 | Canola | nucleus | 21.7 | 16.49 |
| CDY04574 | Canola | nucleus | 18.4 | 16.39 |
| CDY31718 | Canola | nucleus | 18.4 | 16.32 |
| KRH06269 | Soybean | nucleus | 19.34 | 16.14 |
| CDY61930 | Canola | nucleus | 21.23 | 16.13 |
| CDY28567 | Canola | mitochondrion, nucleus | 18.87 | 16.13 |
| CDY09204 | Canola | nucleus | 18.87 | 16.06 |
| CDY15761 | Canola | nucleus | 16.51 | 15.7 |
| KRH47706 | Soybean | nucleus | 18.87 | 15.69 |
| CDY09205 | Canola | nucleus | 18.87 | 14.23 |
| KRH47701 | Soybean | nucleus | 18.87 | 14.08 |
| CDY36150 | Canola | cytosol | 3.77 | 13.79 |
| CDY45604 | Canola | cytosol | 3.77 | 13.79 |
| KRH47704 | Soybean | nucleus | 18.4 | 13.59 |
| CDY34751 | Canola | cytosol | 4.25 | 7.96 |
| CDX76788 | Canola | cytosol | 4.25 | 7.96 |
| CDY51695 | Canola | cytosol | 6.6 | 7.14 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078IML8 | UniProt:A0A078IML8 | EnsemblPlants:CDY50644 | ProteinID:CDY50644 |
| ProteinID:CDY50644.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00097199001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004EC7C53 | SEG:seg | : | : | : | : |
Description
BnaC06g24370DBnaC06g24370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IML8]
Coordinates
chrLK032928:+:90665..91303
Molecular Weight (calculated)
24127.9 Da
IEP (calculated)
7.794
GRAVY (calculated)
-0.698
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGEASLTT CLPFKEQKPM QTPNLAVKQR NGRKQQNPKT TKGRQRIEIK EIQEENRRQV TFSKRRTGLF KKAAELSVLC GAQIGIITFS RCERIYAFGN
101: VNTLIESYLR KTPVMLRSYY GGDVATGVDG DGPMWWERAV ESVPEEEMDE YMKGLNGLRE NLWTRICEMS GDPTAQMNAQ ICPDLMAPVN WKLMDENLTV
201: KNDQGQAGYD GY
101: VNTLIESYLR KTPVMLRSYY GGDVATGVDG DGPMWWERAV ESVPEEEMDE YMKGLNGLRE NLWTRICEMS GDPTAQMNAQ ICPDLMAPVN WKLMDENLTV
201: KNDQGQAGYD GY
001: MEDGEASTIT FLPTTEPKPL QNPNLLAKPK KETKQKKPKT TKGRQKIEIK EIMLETRRQV TFSKRRSGLF KKAAELSVLC GAQIGIITFS RCDRIYSFGN
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
Arabidopsis Description
At1g72350 [Source:UniProtKB/TrEMBL;Acc:Q9C9D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.