Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002480.1-P | Field mustard | nucleus | 98.57 | 98.57 |
| CDY61930 | Canola | nucleus | 96.77 | 96.77 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 13.26 | 66.07 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 22.58 | 61.16 |
| CDY36151 | Canola | nucleus | 17.2 | 54.55 |
| KRH22644 | Soybean | nucleus | 24.37 | 48.92 |
| CDY71457 | Canola | nucleus | 21.51 | 48.39 |
| CDY69485 | Canola | nucleus | 21.51 | 48.39 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 34.05 | 44.6 |
| CDY09205 | Canola | nucleus | 44.44 | 44.13 |
| CDY55987 | Canola | nucleus | 26.52 | 44.05 |
| CDX81713 | Canola | nucleus | 25.45 | 43.83 |
| PGSC0003DMT400013136 | Potato | nucleus | 30.82 | 43.65 |
| CDY09199 | Canola | nucleus | 38.71 | 43.55 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 32.97 | 42.99 |
| CDY09204 | Canola | nucleus | 38.35 | 42.97 |
| CDY28567 | Canola | mitochondrion, nucleus | 37.99 | 42.74 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 33.33 | 41.52 |
| KRG91147 | Soybean | nucleus | 35.13 | 41.0 |
| CDX95426 | Canola | nucleus | 40.14 | 40.58 |
| CDY42198 | Canola | nucleus | 39.78 | 40.22 |
| AT5G60440.1 | Thale cress | nucleus | 43.01 | 40.13 |
| KRG91148 | Soybean | nucleus | 34.77 | 40.08 |
| CDY24623 | Canola | nucleus | 40.5 | 39.93 |
| KRH33030 | Soybean | nucleus | 15.77 | 38.94 |
| CDY46165 | Canola | nucleus | 39.07 | 38.52 |
| KRH32912 | Soybean | nucleus | 23.66 | 38.15 |
| KRH35628 | Soybean | nucleus | 33.69 | 38.06 |
| KRH72042 | Soybean | extracellular | 13.98 | 37.86 |
| KRH32901 | Soybean | nucleus | 23.3 | 37.57 |
| KRH32946 | Soybean | nucleus | 23.3 | 37.57 |
| KRH32909 | Soybean | nucleus | 23.3 | 37.57 |
| KRH32917 | Soybean | nucleus | 23.66 | 37.08 |
| KRH32910 | Soybean | nucleus | 23.66 | 37.08 |
| KRH32900 | Soybean | nucleus | 22.94 | 36.99 |
| KRH32915 | Soybean | nucleus | 22.94 | 36.99 |
| KRH32904 | Soybean | nucleus | 22.94 | 36.99 |
| CDY04574 | Canola | nucleus | 31.54 | 36.97 |
| KRG88448 | Soybean | nucleus | 22.58 | 36.42 |
| KRH32916 | Soybean | nucleus | 22.58 | 36.42 |
| CDY31718 | Canola | nucleus | 31.18 | 36.4 |
| KRH32873 | Soybean | nucleus | 27.96 | 35.94 |
| KRG91149 | Soybean | mitochondrion | 30.47 | 35.12 |
| CDY15761 | Canola | nucleus | 27.24 | 34.08 |
| KRH71935 | Soybean | nucleus | 21.51 | 33.9 |
| KRH72149 | Soybean | mitochondrion | 20.43 | 33.73 |
| KRH28025 | Soybean | nucleus | 20.07 | 33.33 |
| KRH35627 | Soybean | mitochondrion | 29.03 | 32.79 |
| KRH35629 | Soybean | nucleus | 24.73 | 32.7 |
| CDX74094 | Canola | nucleus | 19.71 | 30.73 |
| CDY57614 | Canola | nucleus | 19.71 | 30.73 |
| KRH72146 | Soybean | nucleus | 20.07 | 29.47 |
| CDY45604 | Canola | cytosol | 6.09 | 29.31 |
| CDY51695 | Canola | cytosol | 20.07 | 28.57 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 25.09 | 28.46 |
| CDY36150 | Canola | cytosol | 5.73 | 27.59 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 21.86 | 25.0 |
| CDY21751 | Canola | nucleus | 18.28 | 24.76 |
| CDX99867 | Canola | nucleus | 17.2 | 24.74 |
| CDX81816 | Canola | nucleus | 17.56 | 23.79 |
| CDY26304 | Canola | nucleus | 15.77 | 23.78 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 16.49 | 21.7 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 16.49 | 21.7 |
| CDX72908 | Canola | nucleus | 16.49 | 21.6 |
| KRH32908 | Soybean | nucleus | 6.81 | 21.11 |
| CDX76788 | Canola | cytosol | 8.24 | 20.35 |
| CDY34751 | Canola | cytosol | 7.89 | 19.47 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 24.01 | 19.31 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078H250 | UniProt:A0A078H250 | EnsemblPlants:CDY31547 | ProteinID:CDY31547 |
| ProteinID:CDY31547.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00047863001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF375F | SEG:seg |
Description
BnaA10g13240DBnaA10g13240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H250]
Coordinates
chrLK032274:-:182490..183673
Molecular Weight (calculated)
32028.8 Da
IEP (calculated)
9.298
GRAVY (calculated)
-0.843
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKSKGRQR ITMAKMENES NLQVTFSKRR SGLFKKASEL NTLCGADIAI VVFSPGGKVY SFGHPSVEIV LNRFKNINQP TLNQNNNMRL NEARPNDAIR
101: VMNDFLTQVM NDLELAKKKN EELKKIRKNS KMPVNWWEDP VEELDLAHAK EFKSLLEKLK SYVTDEASKH FQAIFPQPNF YGGSSSGAPF RDGGYINPNL
201: DPSERRMFNV NAYYNQNMYP PNYPLPYGNN NYAGGFVPEY NLNYMHGFNQ YRNQNQNLSF KEEGISENEC HQDGPPPHL
101: VMNDFLTQVM NDLELAKKKN EELKKIRKNS KMPVNWWEDP VEELDLAHAK EFKSLLEKLK SYVTDEASKH FQAIFPQPNF YGGSSSGAPF RDGGYINPNL
201: DPSERRMFNV NAYYNQNMYP PNYPLPYGNN NYAGGFVPEY NLNYMHGFNQ YRNQNQNLSF KEEGISENEC HQDGPPPHL
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.