Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020550.1-P | Field mustard | nucleus | 92.58 | 95.26 |
| CDY71564 | Canola | nucleus | 74.68 | 86.14 |
| CDY71896 | Canola | nucleus | 37.85 | 86.05 |
| CDY70782 | Canola | nucleus | 67.26 | 81.42 |
| CDY05515 | Canola | nucleus | 64.19 | 66.58 |
| CDY05333 | Canola | nucleus | 63.94 | 66.31 |
| CDY05514 | Canola | nucleus | 60.87 | 66.11 |
| CDX80577 | Canola | mitochondrion, nucleus | 36.32 | 47.18 |
| CDX88231 | Canola | nucleus | 32.74 | 46.38 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 3.84 | 36.59 |
| AT5G26650.1 | Thale cress | nucleus | 32.99 | 35.25 |
| AT5G27960.1 | Thale cress | nucleus | 28.39 | 34.69 |
| AT1G65300.1 | Thale cress | nucleus | 24.3 | 34.17 |
| AT1G65330.1 | Thale cress | nucleus | 24.3 | 34.05 |
| AT5G26580.1 | Thale cress | nucleus | 29.16 | 33.04 |
| AT5G35120.1 | Thale cress | cytosol | 8.7 | 31.78 |
| CDY25000 | Canola | nucleus | 17.39 | 31.48 |
| CDY05540 | Canola | nucleus | 16.88 | 30.56 |
| AT1G31630.1 | Thale cress | mitochondrion | 26.34 | 30.38 |
| AT1G59930.1 | Thale cress | cytosol | 10.23 | 30.3 |
| CDY33537 | Canola | nucleus | 15.09 | 30.1 |
| CDX88234 | Canola | nucleus | 13.55 | 28.96 |
| CDY64992 | Canola | mitochondrion, nucleus | 11.0 | 27.92 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 13.55 | 27.89 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 13.55 | 27.18 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 10.74 | 26.92 |
| PGSC0003DMT400003073 | Potato | cytosol | 7.42 | 26.85 |
| CDY05207 | Canola | nucleus | 22.51 | 26.35 |
| CDX80580 | Canola | nucleus | 13.55 | 26.24 |
| KXG28893 | Sorghum | nucleus | 11.25 | 26.19 |
| AT1G31640.1 | Thale cress | mitochondrion | 30.95 | 26.08 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 5.63 | 25.88 |
| KXG28892 | Sorghum | nucleus | 12.02 | 25.41 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 14.32 | 25.34 |
| CDY21372 | Canola | mitochondrion | 10.49 | 25.31 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 12.79 | 25.13 |
| CDY04801 | Canola | mitochondrion, nucleus | 10.23 | 24.69 |
| CDY27734 | Canola | nucleus | 20.97 | 24.4 |
| CDX97329 | Canola | nucleus | 17.9 | 24.14 |
| CDY27735 | Canola | nucleus | 16.37 | 23.97 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 14.07 | 23.71 |
| CDY60402 | Canola | nucleus | 18.41 | 23.68 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 13.81 | 23.48 |
| CDY25744 | Canola | mitochondrion | 9.72 | 23.46 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 11.0 | 23.24 |
| OQU83806 | Sorghum | nucleus | 10.23 | 22.86 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 10.74 | 22.83 |
| EES10067 | Sorghum | mitochondrion | 12.02 | 22.82 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 10.74 | 22.7 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 9.46 | 22.56 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 14.07 | 22.45 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 14.07 | 22.45 |
| EES06917 | Sorghum | mitochondrion, nucleus | 14.83 | 22.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.3 | 22.32 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 13.81 | 22.04 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 12.79 | 22.03 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 10.74 | 21.99 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 13.04 | 21.98 |
| KXG32310 | Sorghum | nucleus | 13.55 | 21.9 |
| TraesCS7D01G548500.1 | Wheat | plastid | 13.04 | 21.7 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 10.23 | 21.62 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 12.53 | 21.59 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 12.53 | 21.59 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 12.53 | 21.59 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 12.53 | 21.4 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 12.79 | 21.37 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 11.51 | 21.33 |
| KXG28889 | Sorghum | nucleus | 13.55 | 21.2 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 12.53 | 20.94 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 14.83 | 20.86 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 12.79 | 20.75 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 12.79 | 20.75 |
| Zm00001d048894_P001 | Maize | mitochondrion | 13.04 | 20.65 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 11.0 | 20.38 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 12.28 | 20.34 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 9.72 | 20.21 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 10.49 | 20.0 |
| CDY38696 | Canola | nucleus | 14.07 | 19.78 |
| OQU83804 | Sorghum | mitochondrion | 11.76 | 19.57 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 12.53 | 19.52 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 12.53 | 19.52 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 9.46 | 19.37 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 12.28 | 19.35 |
| KXG28888 | Sorghum | nucleus | 12.53 | 19.22 |
| KXG28890 | Sorghum | mitochondrion | 12.53 | 19.22 |
| Os03t0582400-01 | Rice | nucleus | 12.02 | 18.88 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 12.53 | 18.77 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 12.53 | 18.77 |
| CDY18830 | Canola | nucleus | 16.37 | 18.6 |
| Zm00001d016791_P001 | Maize | mitochondrion | 13.55 | 18.47 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 12.28 | 18.39 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 11.25 | 18.26 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 11.0 | 18.22 |
| KXG38099 | Sorghum | plastid | 14.58 | 18.1 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 11.0 | 17.84 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 7.42 | 17.79 |
| EER91288 | Sorghum | mitochondrion, nucleus | 14.07 | 17.52 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 11.51 | 17.31 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 9.46 | 16.3 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 9.72 | 15.77 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 8.44 | 15.57 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 12.28 | 15.34 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 12.02 | 15.02 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 11.76 | 14.98 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 10.74 | 13.59 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 11.76 | 12.67 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 9.97 | 12.58 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 11.25 | 12.36 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 10.23 | 12.05 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 8.95 | 10.87 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 8.95 | 10.84 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 8.7 | 10.53 |
| PGSC0003DMT400089615 | Potato | cytosol | 4.6 | 7.56 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078JHF8 | UniProt:A0A078JHF8 | EnsemblPlants:CDY67043 | ProteinID:CDY67043 |
| ProteinID:CDY67043.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00058691001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF355 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004EDB5E2 | SEG:seg | : | : | : | : |
Description
BnaCnng53290DBnaCnng53290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHF8]
Coordinates
chrLK035701:-:922..2187
Molecular Weight (calculated)
44140.6 Da
IEP (calculated)
5.023
GRAVY (calculated)
-0.777
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQKKVIRSA YGRIKIEPMT NSAAMNQTFR KRKKGLLKKA NELSTLYGVK VCAVINSCDS TEPPEFWPSK EGAEAVHSAF MGVLPEERCK RMYDQERHLE
101: ERIQKGQDRV MRLHTENREI ELTEVMFDLL KGKTLMPDQY GDPSFMRDLN LFIGDYVKNL SHRIEFLEAN GEPVPPNVAA TDASGPVVGD ANPFVVETEG
201: LVSNPTEAYD HMRQYDGMDM SVNEQALGGF NDHVHHQNMN HQEPFQYQTP TNFYDQTQPM FYGSSQGMDM NHQEPFQYQG PANFDDQTQP MFYGSSQDKY
301: TGLNHDQGQS SNQYPNSNQS FMSLLMGQPQ QMSDGQDTAT VASMDDKNNG YHQLPITSQM PLTTTTTTAA AAADLSGHRI NNGWPTRFGL D
101: ERIQKGQDRV MRLHTENREI ELTEVMFDLL KGKTLMPDQY GDPSFMRDLN LFIGDYVKNL SHRIEFLEAN GEPVPPNVAA TDASGPVVGD ANPFVVETEG
201: LVSNPTEAYD HMRQYDGMDM SVNEQALGGF NDHVHHQNMN HQEPFQYQTP TNFYDQTQPM FYGSSQGMDM NHQEPFQYQG PANFDDQTQP MFYGSSQDKY
301: TGLNHDQGQS SNQYPNSNQS FMSLLMGQPQ QMSDGQDTAT VASMDDKNNG YHQLPITSQM PLTTTTTTAA AAADLSGHRI NNGWPTRFGL D
001: MKKVKLSLIA NERSRKTSFI KRKDGIFKKL HELSTLCGVQ ACALIYSPFI PVPESWPSRE GAKKVASRFL EMPPTARTKK MMDQETYLME RITKAKEQLK
101: NLAAENRELQ VRRFMFDCVE GKMSQYHYDA KDLQDLQSCI NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE SFSDSPIHAT TGVVDTLNAT
201: NPHVLTGDMT PFLDADATAV TASSRFFDHI PYENMNMSQN LHEPFQHLVP TNVCDFFQNQ NMNQVQYQAP NNLFNQIQRE FYNINLNLNL NLNSNQYLNQ
301: QQSFMNPMVE QHMNHVGGRE SIPFVDGNCY NYHQLPSNQL PAVDHASTSY MPSTTGVYDP YINNNL
101: NLAAENRELQ VRRFMFDCVE GKMSQYHYDA KDLQDLQSCI NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE SFSDSPIHAT TGVVDTLNAT
201: NPHVLTGDMT PFLDADATAV TASSRFFDHI PYENMNMSQN LHEPFQHLVP TNVCDFFQNQ NMNQVQYQAP NNLFNQIQRE FYNINLNLNL NLNSNQYLNQ
301: QQSFMNPMVE QHMNHVGGRE SIPFVDGNCY NYHQLPSNQL PAVDHASTSY MPSTTGVYDP YINNNL
Arabidopsis Description
AGL36Agamous-like MADS-box protein AGL36 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.