Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004927.1-P | Field mustard | nucleus | 99.59 | 99.17 |
| CDY18911 | Canola | nucleus | 93.36 | 94.94 |
| CDX74754 | Canola | nucleus | 93.78 | 88.28 |
| AT2G45650.1 | Thale cress | nucleus | 85.89 | 82.14 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 22.82 | 82.09 |
| CDY53885 | Canola | nucleus | 81.74 | 76.65 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 65.98 | 65.16 |
| KRH48304 | Soybean | nucleus | 63.49 | 62.45 |
| KRH65193 | Soybean | nucleus | 62.66 | 61.63 |
| CDY72391 | Canola | nucleus | 18.67 | 60.0 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 59.75 | 59.5 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 59.34 | 59.09 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 57.26 | 58.72 |
| Solyc01g093960.2.1 | Tomato | nucleus | 59.34 | 56.75 |
| PGSC0003DMT400000383 | Potato | nucleus | 58.92 | 55.69 |
| Os02t0682200-01 | Rice | nucleus | 57.26 | 55.2 |
| KXG26975 | Sorghum | nucleus | 53.53 | 54.89 |
| EES07448 | Sorghum | nucleus | 56.85 | 53.73 |
| Os04t0580700-01 | Rice | nucleus | 55.6 | 52.76 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 57.26 | 51.69 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 57.26 | 51.49 |
| CDX79856 | Canola | nucleus | 18.67 | 50.56 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 53.53 | 49.81 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 55.19 | 48.9 |
| Zm00001d051465_P002 | Maize | nucleus | 56.43 | 46.42 |
| CDY19977 | Canola | nucleus | 19.5 | 46.08 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 54.77 | 45.52 |
| CDX89097 | Canola | nucleus | 45.23 | 44.31 |
| CDY57524 | Canola | nucleus | 45.64 | 44.0 |
| CDY34718 | Canola | nucleus | 45.23 | 43.25 |
| CDY43239 | Canola | nucleus | 44.81 | 43.2 |
| CDY26462 | Canola | nucleus | 44.81 | 42.52 |
| Zm00001d017614_P003 | Maize | nucleus | 48.55 | 42.24 |
| CDY11824 | Canola | nucleus | 42.32 | 41.63 |
| CDY27603 | Canola | nucleus | 43.57 | 41.5 |
| CDX71922 | Canola | nucleus | 23.24 | 41.48 |
| CDX84935 | Canola | nucleus | 43.15 | 41.43 |
| CDY34564 | Canola | nucleus | 37.34 | 41.28 |
| CDY66153 | Canola | nucleus | 41.91 | 41.22 |
| CDY48451 | Canola | nucleus | 26.14 | 41.18 |
| CDX69499 | Canola | nucleus | 44.81 | 40.91 |
| CDY36077 | Canola | nucleus | 37.34 | 40.72 |
| CDX70651 | Canola | nucleus | 43.57 | 40.54 |
| CDX78653 | Canola | nucleus | 43.57 | 40.54 |
| CDY15724 | Canola | nucleus | 42.32 | 40.48 |
| CDY51202 | Canola | nucleus | 41.91 | 39.3 |
| CDY42841 | Canola | nucleus | 39.0 | 39.17 |
| CDY04164 | Canola | nucleus | 41.91 | 39.15 |
| CDY58690 | Canola | nucleus | 38.59 | 38.59 |
| CDY47002 | Canola | nucleus | 38.59 | 38.59 |
| CDY02978 | Canola | nucleus | 40.66 | 38.28 |
| CDY02185 | Canola | nucleus | 38.17 | 38.17 |
| CDY16832 | Canola | nucleus | 38.17 | 38.17 |
| CDY03905 | Canola | nucleus | 42.32 | 37.78 |
| CDY33554 | Canola | nucleus | 38.17 | 35.94 |
| CDX95960 | Canola | nucleus | 38.17 | 35.94 |
| CDY65811 | Canola | nucleus | 37.76 | 35.55 |
| CDX90741 | Canola | nucleus | 34.02 | 35.5 |
| CDY00082 | Canola | nucleus | 36.1 | 35.08 |
| CDY09267 | Canola | nucleus | 34.85 | 33.73 |
| CDY45899 | Canola | nucleus | 34.85 | 33.73 |
| CDX78909 | Canola | nucleus | 34.85 | 33.33 |
| CDX79857 | Canola | nucleus | 33.61 | 33.2 |
| CDY04265 | Canola | nucleus | 37.76 | 32.85 |
| CDX98597 | Canola | nucleus | 34.02 | 32.67 |
| CDX86353 | Canola | nucleus | 33.61 | 32.53 |
| CDX75686 | Canola | nucleus | 30.29 | 31.88 |
| CDX69345 | Canola | nucleus | 29.88 | 31.72 |
| CDY25613 | Canola | nucleus | 29.88 | 31.58 |
| CDY07357 | Canola | nucleus | 37.76 | 31.49 |
| CDX90394 | Canola | nucleus | 29.88 | 31.44 |
| CDY33113 | Canola | nucleus | 40.25 | 31.39 |
| CDX75412 | Canola | nucleus | 31.12 | 31.25 |
| CDX89496 | Canola | nucleus | 29.46 | 31.0 |
| CDX69036 | Canola | nucleus | 30.71 | 30.83 |
| CDX98330 | Canola | nucleus | 31.54 | 30.65 |
| CDY42485 | Canola | nucleus | 47.72 | 30.42 |
| CDY49287 | Canola | nucleus | 29.88 | 30.0 |
| CDX72465 | Canola | nucleus | 29.88 | 30.0 |
| CDY49254 | Canola | nucleus | 33.2 | 29.09 |
| CDX89005 | Canola | nucleus | 31.95 | 27.9 |
| CDY49686 | Canola | nucleus | 19.92 | 27.75 |
| CDY00589 | Canola | nucleus | 31.54 | 27.64 |
| CDY45709 | Canola | nucleus | 19.5 | 27.17 |
| CDX99406 | Canola | nucleus | 34.44 | 26.6 |
| CDY60297 | Canola | nucleus | 31.95 | 26.37 |
| CDY65347 | Canola | nucleus | 16.18 | 24.68 |
| CDX67765 | Canola | nucleus | 31.95 | 22.13 |
| CDX85287 | Canola | nucleus | 17.01 | 21.93 |
| CDY13236 | Canola | mitochondrion | 17.43 | 20.9 |
| CDX71166 | Canola | nucleus | 29.88 | 20.69 |
| CDY35780 | Canola | nucleus | 16.6 | 20.3 |
| CDY01574 | Canola | nucleus | 9.96 | 19.51 |
| CDY71878 | Canola | endoplasmic reticulum | 19.5 | 17.87 |
| CDY65346 | Canola | cytosol | 0.83 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078G1P9 | UniProt:A0A078G1P9 | EnsemblPlants:CDY18912 | ProteinID:CDY18912 |
| ProteinID:CDY18912.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00006114001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE534A | SEG:seg |
Description
BnaC04g04380DBnaC04g04380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1P9]
Coordinates
chrLK032090:-:312032..314092
Molecular Weight (calculated)
27418.0 Da
IEP (calculated)
9.348
GRAVY (calculated)
-0.484
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSV GLYLVGILKG CVFYPKNWCQ EVAKLKAKYE SLVRTNRHLL
101: GEDIGEMGVK QLQALERQLE AALTATRQRK TQVMMEEMED LRKKERQLGD INKQLKIKFE AGGHAFKSFQ DFWPNSAASM AGDPNNSKFP VQPSHPDSVD
201: CNTEPFLQIG FQQHYYVQGE GSSVPKSNVA CETNFVQDWV L
101: GEDIGEMGVK QLQALERQLE AALTATRQRK TQVMMEEMED LRKKERQLGD INKQLKIKFE AGGHAFKSFQ DFWPNSAASM AGDPNNSKFP VQPSHPDSVD
201: CNTEPFLQIG FQQHYYVQGE GSSVPKSNVA CETNFVQDWV L
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
Arabidopsis Description
AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.