Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014454.1-P | Field mustard | nucleus | 89.84 | 96.09 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 20.33 | 74.63 |
| AT3G61120.1 | Thale cress | nucleus | 67.89 | 68.44 |
| CDY42485 | Canola | nucleus | 89.02 | 57.94 |
| CDY72391 | Canola | nucleus | 16.67 | 54.67 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 49.19 | 49.59 |
| CDY18911 | Canola | nucleus | 46.34 | 48.1 |
| CDY19977 | Canola | nucleus | 19.92 | 48.04 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 45.53 | 47.66 |
| Solyc01g093960.2.1 | Tomato | nucleus | 48.37 | 47.22 |
| PGSC0003DMT400000383 | Potato | nucleus | 48.37 | 46.67 |
| CDX74754 | Canola | nucleus | 48.37 | 46.48 |
| Os02t0682200-01 | Rice | nucleus | 47.15 | 46.4 |
| CDY53885 | Canola | nucleus | 48.37 | 46.3 |
| KRH48304 | Soybean | nucleus | 45.94 | 46.12 |
| CDX79856 | Canola | nucleus | 16.67 | 46.07 |
| KRH65193 | Soybean | nucleus | 45.53 | 45.71 |
| EES07448 | Sorghum | nucleus | 47.15 | 45.49 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 44.72 | 45.45 |
| CDY18912 | Canola | nucleus | 44.31 | 45.23 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 44.31 | 45.04 |
| KXG26975 | Sorghum | nucleus | 41.87 | 43.83 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 45.94 | 43.63 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 47.15 | 43.45 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 47.15 | 43.28 |
| CDX71922 | Canola | nucleus | 23.58 | 42.96 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 46.75 | 42.28 |
| Os04t0580700-01 | Rice | nucleus | 43.5 | 42.13 |
| CDY48451 | Canola | nucleus | 25.61 | 41.18 |
| CDY34718 | Canola | nucleus | 41.06 | 40.08 |
| CDY15724 | Canola | nucleus | 41.06 | 40.08 |
| CDY26462 | Canola | nucleus | 41.06 | 39.76 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 46.75 | 39.66 |
| CDY27603 | Canola | nucleus | 40.65 | 39.53 |
| CDX84935 | Canola | nucleus | 40.24 | 39.44 |
| CDY11824 | Canola | nucleus | 39.02 | 39.18 |
| CDX69499 | Canola | nucleus | 41.87 | 39.02 |
| Zm00001d051465_P002 | Maize | nucleus | 46.34 | 38.91 |
| CDY43239 | Canola | nucleus | 39.43 | 38.8 |
| CDY57524 | Canola | nucleus | 39.43 | 38.8 |
| CDY66153 | Canola | nucleus | 38.62 | 38.78 |
| CDY34564 | Canola | nucleus | 34.15 | 38.53 |
| CDY36077 | Canola | nucleus | 34.55 | 38.46 |
| CDX78653 | Canola | nucleus | 40.24 | 38.22 |
| CDX70651 | Canola | nucleus | 40.24 | 38.22 |
| CDY03905 | Canola | nucleus | 40.65 | 37.04 |
| CDY42841 | Canola | nucleus | 34.15 | 35.0 |
| CDY02185 | Canola | nucleus | 34.15 | 34.85 |
| CDY58690 | Canola | nucleus | 33.74 | 34.44 |
| CDY04164 | Canola | nucleus | 35.77 | 34.11 |
| CDY16832 | Canola | nucleus | 33.33 | 34.02 |
| CDY47002 | Canola | nucleus | 33.33 | 34.02 |
| CDY65811 | Canola | nucleus | 34.96 | 33.59 |
| CDY33554 | Canola | nucleus | 34.96 | 33.59 |
| CDY51202 | Canola | nucleus | 34.96 | 33.46 |
| CDX95960 | Canola | nucleus | 34.55 | 33.2 |
| Zm00001d017614_P003 | Maize | nucleus | 36.99 | 32.85 |
| CDX90741 | Canola | nucleus | 30.49 | 32.47 |
| CDY02978 | Canola | nucleus | 33.74 | 32.42 |
| CDX69345 | Canola | nucleus | 29.27 | 31.72 |
| CDX75686 | Canola | nucleus | 29.27 | 31.44 |
| CDY25613 | Canola | nucleus | 28.86 | 31.14 |
| CDY00082 | Canola | nucleus | 31.3 | 31.05 |
| CDY04265 | Canola | nucleus | 34.96 | 31.05 |
| CDX78909 | Canola | nucleus | 31.71 | 30.95 |
| CDY45899 | Canola | nucleus | 31.3 | 30.92 |
| CDY09267 | Canola | nucleus | 31.3 | 30.92 |
| CDX72465 | Canola | nucleus | 30.08 | 30.83 |
| CDX90394 | Canola | nucleus | 28.46 | 30.57 |
| CDY49287 | Canola | nucleus | 29.67 | 30.42 |
| CDX79857 | Canola | nucleus | 30.08 | 30.33 |
| CDX98597 | Canola | nucleus | 30.89 | 30.28 |
| CDX89496 | Canola | nucleus | 28.05 | 30.13 |
| CDX86353 | Canola | nucleus | 30.49 | 30.12 |
| CDX75412 | Canola | nucleus | 29.27 | 30.0 |
| CDY07357 | Canola | nucleus | 34.96 | 29.76 |
| CDX69036 | Canola | nucleus | 28.86 | 29.58 |
| CDX98330 | Canola | nucleus | 29.27 | 29.03 |
| CDY33113 | Canola | nucleus | 35.37 | 28.16 |
| CDY49254 | Canola | nucleus | 29.67 | 26.55 |
| CDY00589 | Canola | nucleus | 28.86 | 25.82 |
| CDX89005 | Canola | nucleus | 28.86 | 25.72 |
| CDX99406 | Canola | nucleus | 31.71 | 25.0 |
| CDY65347 | Canola | nucleus | 15.45 | 24.05 |
| CDY60297 | Canola | nucleus | 28.46 | 23.97 |
| CDX71166 | Canola | nucleus | 30.08 | 21.26 |
| CDX67765 | Canola | nucleus | 30.08 | 21.26 |
| CDY13236 | Canola | mitochondrion | 16.67 | 20.4 |
| CDY49686 | Canola | nucleus | 13.82 | 19.65 |
| CDX85287 | Canola | nucleus | 14.63 | 19.25 |
| CDY45709 | Canola | nucleus | 13.41 | 19.08 |
| CDY71878 | Canola | endoplasmic reticulum | 20.33 | 19.01 |
| CDY35780 | Canola | nucleus | 15.04 | 18.78 |
| CDY01574 | Canola | nucleus | 6.91 | 13.82 |
| CDY65346 | Canola | cytosol | 0.81 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DJP5 | EnsemblPlants:CDX89097 | ProteinID:CDX89097 | ProteinID:CDX89097.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00149230001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE616B | : | : | : |
Description
BnaA04g00890D
Coordinates
chrLK031857:-:1022358..1024542
Molecular Weight (calculated)
28104.3 Da
IEP (calculated)
5.800
GRAVY (calculated)
-0.625
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGRVEVKR IENKVNRQVT FSKRKGGLLK KAYELSVLCD VEVALIIFSS SGKLYEFSSD AMEKTIERYN RCNINILDNN RPEESTQKWS QEVTKLRSKY
101: ESLLRTHRYL LGEDLGEMSV KELETLERQL EGALSATRQR KMQVTMEQME DLRRKANLEI ANDSSRKFLL EVEGHEFKGF QDLLLNSDAR AGSTDFSLLS
201: SHHNSVDCDV GQFLKIGFQQ QYEQGDGSLV LESNVGCDCE TNLTQG
101: ESLLRTHRYL LGEDLGEMSV KELETLERQL EGALSATRQR KMQVTMEQME DLRRKANLEI ANDSSRKFLL EVEGHEFKGF QDLLLNSDAR AGSTDFSLLS
201: SHHNSVDCDV GQFLKIGFQQ QYEQGDGSLV LESNVGCDCE TNLTQG
001: MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFST GGKLYEFSNV GVGRTIERYY RCKDNLLDND TLEDTQGLRQ EVTKLKCKYE
101: SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
201: QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
101: SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
201: QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
Arabidopsis Description
AGL13Agamous-like MADS-box protein AGL13 [Source:UniProtKB/Swiss-Prot;Acc:Q38837]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.