Factsheet for Bra014454.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000393.1-P
Bra004928.1-P
Bra010623.1-P
Bra011797.1-P
Bra012564.1-P
Bra013364.1-P
Bra020600.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61120.1	Bra020600.1-P	AT1G48150.1	15805477
AT3G61120.1	Bra000393.1-P	AT2G45660.1	15805477
AT3G61120.1	Bra004928.1-P	AT2G45660.1	15805477
AT3G61120.1	Bra039324.1-P	AT2G45660.1	15805477
AT3G61120.1	Bra012564.1-P	AT4G18960.1	15805477
AT3G61120.1	Bra013364.1-P	AT4G18960.1	15805477
AT3G61120.1	Bra010623.1-P	AT4G37940.1	15805477
AT3G61120.1	Bra011797.1-P	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89097	Canola	nucleus	96.09	89.84
AT3G61120.1	Thale cress	nucleus	67.39	63.52
CDY42485	Canola	nucleus	89.13	54.23
VIT_15s0048g01270.t01	Wine grape	nucleus	49.13	46.31
GSMUA_Achr4P30120_001	Banana	nucleus	46.52	45.53
Solyc01g093960.2.1	Tomato	nucleus	47.83	43.65
Bra000392.1-P	Field mustard	nucleus	48.7	43.58
GSMUA_Achr1P00750_001	Banana	nucleus	45.65	43.39
GSMUA_Achr2P10250_001	Banana	nucleus	45.65	43.39
Os02t0682200-01	Rice	nucleus	46.96	43.2
PGSC0003DMT400000383	Potato	nucleus	47.83	43.14
KRH48304	Soybean	nucleus	45.65	42.86
KRH65193	Soybean	nucleus	45.22	42.45
EES07448	Sorghum	nucleus	46.96	42.35
Bra004927.1-P	Field mustard	nucleus	43.48	41.32
Bra004361.1-P	Field mustard	nucleus	33.48	40.74
TraesCS6B01G286400.1	Wheat	nucleus	45.65	40.54
KXG26975	Sorghum	nucleus	41.3	40.43
HORVU0Hr1G032300.1	Barley	nucleus	46.52	40.07
HORVU6Hr1G066140.9	Barley	nucleus	46.52	39.93
Os04t0580700-01	Rice	nucleus	43.91	39.76
Bra008674.1-P	Field mustard	nucleus	43.48	39.68
Bra030032.1-P	Field mustard	nucleus	43.04	39.29
TraesCS6D01G240200.3	Wheat	nucleus	46.09	38.97
Bra006322.1-P	Field mustard	nucleus	42.17	38.8
Bra032814.1-P	Field mustard	nucleus	42.61	38.74
Bra025411.1-P	Field mustard	nucleus	29.57	38.64
Bra021470.1-P	Field mustard	nucleus	42.17	38.49
Bra010955.1-P	Field mustard	nucleus	40.43	38.11
Bra039170.1-P	Field mustard	nucleus	41.3	38.0
TraesCS6A01G259000.2	Wheat	nucleus	46.09	36.55
Zm00001d051465_P002	Maize	nucleus	46.09	36.18
Bra029347.1-P	Field mustard	nucleus	35.65	34.17
Bra012997.1-P	Field mustard	nucleus	35.65	34.02
Bra025126.1-P	Field mustard	nucleus	37.39	33.46
Bra035952.1-P	Field mustard	nucleus	34.78	33.2
Bra011021.1-P	Field mustard	nucleus	36.52	33.07
Zm00001d017614_P003	Maize	nucleus	39.13	32.49
Bra038326.1-P	Field mustard	nucleus	36.09	32.42
Bra026543.1-P	Field mustard	nucleus	37.83	32.34
Bra037895.1-P	Field mustard	nucleus	32.17	32.17
Bra000696.1-P	Field mustard	nucleus	31.74	31.6
Bra013364.1-P	Field mustard	nucleus	34.35	31.35
Bra030222.1-P	Field mustard	nucleus	30.43	30.84
Bra011797.1-P	Field mustard	nucleus	30.43	30.7
Bra012564.1-P	Field mustard	nucleus	33.48	30.68
Bra010623.1-P	Field mustard	nucleus	28.26	30.37
Bra004007.1-P	Field mustard	nucleus	35.65	30.26
Bra036201.1-P	Field mustard	nucleus	32.61	30.24
Bra039921.1-P	Field mustard	nucleus	29.57	29.96
Bra004716.1-P	Field mustard	nucleus	31.74	29.92
Bra017376.1-P	Field mustard	nucleus	31.3	29.63
Bra007419.1-P	Field mustard	nucleus	31.3	29.39
Bra017638.1-P	Field mustard	nucleus	30.43	29.17
Bra014552.1-P	Field mustard	nucleus	30.87	28.63
Bra003356.1-P	Field mustard	nucleus	30.87	26.01
Bra011509.1-P	Field mustard	nucleus	27.39	21.72
Bra040719.1-P	Field mustard	nucleus	15.22	20.59

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra014454	EnsemblPlants:Bra014454.1	EnsemblPlants:Bra014454.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009555	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010468
GO:GO:0045944	GO:GO:0046983	GO:GO:0048481	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
UniProt:M4DD86	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF146	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002543A19	:	:

Description

AT2G45650 (E=6e-077) AGL6 | AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factor

Coordinates

chrA04:+:739896..741902

Molecular Weight (calculated)

26209.1 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.658

Length

230 amino acids

Sequence
(BLAST)

001: MARGRVEVKR IENKVNRQVT FSKRKGGLLK KAYELSVLCD VEVALIIFSS SGKLYEFSSD AMEKTIERYN RCNINILDNN RPEESTQKWS QEVTKLRSKY
101: ESLLRTHRYL LGEDLGEMSV KELETLERQL EGALSATRQR KERQLGDINK KMKLEVEGHE FKGFQDLLLN SDARAGSTDF SLLSSHHNSV DCDVGQFLKI
201: GFQQQYEQGD GSLVLESNVG CDCETNLTQG

Best Arabidopsis Sequence Match ( AT3G61120.1 )
(BLAST)

001: MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFST GGKLYEFSNV GVGRTIERYY RCKDNLLDND TLEDTQGLRQ EVTKLKCKYE
101: SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
201: QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ

Arabidopsis Description

AGL13Agamous-like MADS-box protein AGL13 [Source:UniProtKB/Swiss-Prot;Acc:Q38837]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.