Factsheet for Bra012997.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra000392.1-P
Bra000393.1-P
Bra004927.1-P
Bra004928.1-P
Bra010623.1-P
Bra011797.1-P
Bra012564.1-P
Bra013364.1-P
Bra017376.1-P
Bra017974.1-P
Bra019221.1-P
Bra025126.1-P
Bra026543.1-P
Bra029424.1-P
Bra039324.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60910.1	Bra017376.1-P	AT2G03710.1	15805477
AT5G60910.1	Bra025126.1-P	AT2G03710.1	15805477
AT5G60910.1	Bra026543.1-P	AT2G03710.1	15805477
AT5G60910.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G60910.1	Bra000392.1-P	AT2G45650.1	15805477
AT5G60910.1	Bra004927.1-P	AT2G45650.1	15805477
AT5G60910.1	Bra000393.1-P	AT2G45660.1	15805477
AT5G60910.1	Bra004928.1-P	AT2G45660.1	15805477
AT5G60910.1	Bra039324.1-P	AT2G45660.1	15805477
AT5G60910.1	Bra000393.1-P	AT2G45660.1	21798944
AT5G60910.1	Bra004928.1-P	AT2G45660.1	21798944
AT5G60910.1	Bra039324.1-P	AT2G45660.1	21798944
AT5G60910.1	Bra017974.1-P	AT3G49580.1	21798944
AT5G60910.1	Bra029424.1-P	AT4G11880.1	15805477
AT5G60910.1	Bra039723.1-P	AT4G14640.1	17360592
AT5G60910.1	Bra012564.1-P	AT4G18960.1	15805477
AT5G60910.1	Bra013364.1-P	AT4G18960.1	15805477
AT5G60910.1	Bra019221.1-P	AT4G24540.1	15805477
AT5G60910.1	Bra010623.1-P	AT4G37940.1	15805477
AT5G60910.1	Bra011797.1-P	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02185	Canola	nucleus	99.59	99.59
CDY58690	Canola	nucleus	95.44	95.44
Bra029347.1-P	Field mustard	nucleus	92.12	92.5
AT5G60910.1	Thale cress	nucleus	92.12	91.74
Bra035952.1-P	Field mustard	nucleus	91.29	91.29
KRH03173	Soybean	nucleus	61.41	61.92
Solyc06g069430.2.1	Tomato	nucleus	62.24	61.22
Solyc03g114830.2.1	Tomato	nucleus	61.83	60.32
Bra004361.1-P	Field mustard	nucleus	47.3	60.32
KRH56774	Soybean	nucleus	61.0	60.25
PGSC0003DMT400063313	Potato	nucleus	61.0	59.27
VIT_17s0000g04990.t01	Wine grape	nucleus	58.92	58.44
PGSC0003DMT400010451	Potato	nucleus	60.58	58.4
Bra025411.1-P	Field mustard	nucleus	39.0	53.41
GSMUA_Achr2P13650_001	Banana	nucleus	54.36	53.25
GSMUA_Achr6P00050_001	Banana	nucleus	53.11	52.89
TraesCS5A01G391700.1	Wheat	nucleus	52.7	52.05
EER90862	Sorghum	nucleus	52.7	51.84
GSMUA_Achr4P23540_001	Banana	nucleus	53.11	51.61
Os03t0752800-02	Rice	nucleus	52.28	51.22
GSMUA_Achr7P00460_001	Banana	nucleus	53.11	51.2
GSMUA_Achr8P04330_001	Banana	nucleus	51.87	51.02
TraesCS5B01G396600.2	Wheat	nucleus	53.11	51.0
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	53.11	50.39
Bra038326.1-P	Field mustard	nucleus	52.7	49.61
GSMUA_Achr3P30440_001	Banana	nucleus	46.47	48.7
GSMUA_Achr10P...	Banana	nucleus	57.26	48.42
Os07t0108900-02	Rice	nucleus	53.11	47.94
EER97510	Sorghum	nucleus	50.21	47.83
TraesCS2D01G262700.1	Wheat	nucleus	53.53	47.6
EER95753	Sorghum	nucleus	53.11	47.41
Zm00001d022088_P004	Maize	nucleus	50.62	47.29
TraesCS2A01G261200.2	Wheat	nucleus	53.53	47.08
TraesCS2B01G281000.1	Wheat	nucleus	53.53	47.08
GSMUA_Achr3P02280_001	Banana	nucleus	51.04	46.77
Zm00001d018667_P003	Maize	nucleus	52.28	46.49
Bra011021.1-P	Field mustard	nucleus	48.96	46.46
GSMUA_Achr3P25280_001	Banana	nucleus	51.04	46.24
Os07t0605200-01	Rice	nucleus	47.3	45.78
Bra004007.1-P	Field mustard	nucleus	51.45	45.76
TraesCS2A01G174300.3	Wheat	nucleus	50.21	45.32
Zm00001d013259_P002	Maize	nucleus	51.87	44.8
TraesCS2D01G181400.3	Wheat	nucleus	49.38	44.57
TraesCS2B01G200800.1	Wheat	nucleus	49.38	44.57
Bra036201.1-P	Field mustard	nucleus	45.64	44.35
Zm00001d034045_P003	Maize	nucleus	51.04	42.27
Zm00001d007949_P001	Maize	nucleus	53.11	41.97
HORVU2Hr1G063800.7	Barley	nucleus, plastid	53.11	41.83
HORVU5Hr1G095630.3	Barley	nucleus, plastid	51.87	40.72
Os12t0501700-00	Rice	nucleus	38.59	39.91
Bra006322.1-P	Field mustard	nucleus	40.25	38.8
Bra008674.1-P	Field mustard	nucleus	40.25	38.49
Bra000392.1-P	Field mustard	nucleus	40.66	38.13
Bra021470.1-P	Field mustard	nucleus	39.83	38.1
Bra004927.1-P	Field mustard	nucleus	38.17	38.02
Bra010955.1-P	Field mustard	nucleus	38.17	37.7
Bra039170.1-P	Field mustard	nucleus	38.59	37.2
Bra030032.1-P	Field mustard	nucleus	38.59	36.9
KXG23502	Sorghum	nucleus	34.02	36.77
Bra032814.1-P	Field mustard	nucleus	37.76	35.97
Bra014454.1-P	Field mustard	nucleus	34.02	35.65
Bra037895.1-P	Field mustard	nucleus	33.2	34.78
Bra004716.1-P	Field mustard	nucleus	34.44	34.02
Bra025126.1-P	Field mustard	nucleus	36.1	33.85
Zm00001d023736_P001	Maize	nucleus	35.68	33.46
Bra026543.1-P	Field mustard	nucleus	37.34	33.46
Bra000696.1-P	Field mustard	nucleus	31.95	33.33
Bra012564.1-P	Field mustard	nucleus	34.02	32.67
Bra013364.1-P	Field mustard	nucleus	34.02	32.54
Bra017638.1-P	Field mustard	nucleus	31.54	31.67
Bra007419.1-P	Field mustard	nucleus	31.95	31.43
Bra010623.1-P	Field mustard	nucleus	27.8	31.31
Bra030222.1-P	Field mustard	nucleus	29.46	31.28
Bra011797.1-P	Field mustard	nucleus	29.46	31.14
Bra014552.1-P	Field mustard	nucleus	31.95	31.05
Bra039921.1-P	Field mustard	nucleus	27.8	29.52
Bra017376.1-P	Field mustard	nucleus	28.22	27.98
Bra003356.1-P	Field mustard	nucleus	30.71	27.11
Bra011509.1-P	Field mustard	nucleus	29.46	24.48
Bra040719.1-P	Field mustard	nucleus	14.94	21.18

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra012997	EnsemblPlants:Bra012997.1	EnsemblPlants:Bra012997.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4D937
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF155	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025404A0	SEG:seg	:	:

Description

AT5G60910 (E=2e-114) AGL8, FUL | AGL8 (agamous-like 8); transcription factor

Coordinates

chrA03:-:21138363..21141078

Molecular Weight (calculated)

27450.0 Da

IEP (calculated)

9.871

GRAVY (calculated)

-0.623

Length

241 amino acids

Sequence
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRPGLLK KAHEISVLCD AEVALVIFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDISQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLHAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNALLK KIKEREKNTV QQEGQLIQCS NNSSILQPQY
201: CLTSSRDGFV GRVGGDDGGA SSLAEPNSLL PAWMLRLATN E

Best Arabidopsis Sequence Match ( AT5G60910.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE

Arabidopsis Description

AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.