Factsheet for VIT_17s0000g04990.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00180.t01
VIT_01s0011g00110.t01
VIT_02s0025g04650.t01
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_10s0003g02070.t01
VIT_15s0048g01270.t01
VIT_16s0098g00600.t01
VIT_18s0001g07460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60910.1	VIT_01s0011g00110.t01	AT2G03710.1	15805477
AT5G60910.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT5G60910.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT5G60910.1	VIT_15s0048g01270.t01	AT2G45650.1	15805477
AT5G60910.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT5G60910.1	VIT_02s0025g04650.t01	AT4G11880.1	15805477
AT5G60910.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT5G60910.1	VIT_10s0003g02070.t01	AT4G18960.1	15805477
AT5G60910.1	VIT_18s0001g07460.t01	AT4G24540.1	15805477
AT5G60910.1	VIT_00s0211g00180.t01	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01800.t01	Wine grape	nucleus	17.28	65.62
VIT_01s0011g00100.t01	Wine grape	nucleus	64.61	65.15
Solyc03g114830.2.1	Tomato	nucleus	65.84	64.78
PGSC0003DMT400063313	Potato	nucleus	64.61	63.31
Solyc06g069430.2.1	Tomato	nucleus	62.96	62.45
VIT_14s0083g01030.t01	Wine grape	nucleus	63.37	62.35
PGSC0003DMT400010451	Potato	nucleus	62.96	61.2
AT5G60910.1	Thale cress	nucleus	60.49	60.74
Bra029347.1-P	Field mustard	nucleus	59.26	60.0
CDY42841	Canola	nucleus	59.26	60.0
Bra035952.1-P	Field mustard	nucleus	59.26	59.75
CDY16832	Canola	nucleus	59.26	59.75
CDY02185	Canola	nucleus	58.85	59.34
CDY58690	Canola	nucleus	58.85	59.34
EER90862	Sorghum	nucleus	59.67	59.18
Bra012997.1-P	Field mustard	nucleus	58.44	58.92
CDY47002	Canola	nucleus	58.02	58.51
TraesCS5A01G391700.1	Wheat	nucleus	58.44	58.2
KRH03173	Soybean	nucleus	57.2	58.16
GSMUA_Achr2P13650_001	Banana	nucleus	58.85	58.13
GSMUA_Achr4P23540_001	Banana	nucleus	58.85	57.66
GSMUA_Achr7P00460_001	Banana	nucleus	58.85	57.2
KRH56774	Soybean	nucleus	56.79	56.56
Os03t0752800-02	Rice	nucleus	57.2	56.5
TraesCS5B01G396600.2	Wheat	nucleus	57.61	55.78
GSMUA_Achr6P00050_001	Banana	nucleus	55.14	55.37
TraesCS5D01G401500.1	Wheat	cytosol, nucleus	57.61	55.12
GSMUA_Achr8P04330_001	Banana	nucleus	53.5	53.06
EER97510	Sorghum	nucleus	55.14	52.96
EER95753	Sorghum	nucleus	58.02	52.22
TraesCS2D01G262700.1	Wheat	nucleus	58.02	52.03
Zm00001d022088_P004	Maize	nucleus	55.14	51.94
GSMUA_Achr3P30440_001	Banana	nucleus	48.97	51.74
Zm00001d018667_P003	Maize	nucleus	57.61	51.66
Zm00001d013259_P002	Maize	nucleus	59.26	51.61
TraesCS2A01G261200.2	Wheat	nucleus	58.02	51.46
TraesCS2B01G281000.1	Wheat	nucleus	58.02	51.46
Os07t0108900-02	Rice	nucleus	55.97	50.94
GSMUA_Achr10P...	Banana	nucleus	59.67	50.88
GSMUA_Achr3P02280_001	Banana	nucleus	54.32	50.19
Os07t0605200-01	Rice	nucleus	51.03	49.8
TraesCS2A01G174300.3	Wheat	nucleus	53.91	49.06
Zm00001d034045_P003	Maize	nucleus	57.61	48.11
TraesCS2D01G181400.3	Wheat	nucleus	52.67	47.94
TraesCS2B01G200800.1	Wheat	nucleus	52.67	47.94
GSMUA_Achr3P25280_001	Banana	nucleus	52.26	47.74
VIT_01s0010g03900.t01	Wine grape	nucleus	43.21	47.51
Zm00001d007949_P001	Maize	nucleus	58.02	46.23
HORVU2Hr1G063800.7	Barley	nucleus, plastid	57.61	45.75
VIT_14s0083g01050.t01	Wine grape	nucleus	45.68	45.68
VIT_01s0011g00110.t01	Wine grape	nucleus	45.68	45.68
HORVU5Hr1G095630.3	Barley	nucleus, plastid	57.2	45.28
VIT_17s0000g05000.t01	Wine grape	nucleus	44.44	43.9
VIT_15s0048g01270.t01	Wine grape	nucleus	44.03	43.85
VIT_16s0022g02330.t01	Wine grape	nucleus	44.44	43.37
Os12t0501700-00	Rice	nucleus	40.74	42.49
KXG23502	Sorghum	nucleus	36.21	39.46
VIT_18s0041g01880.t01	Wine grape	nucleus	35.39	38.56
VIT_10s0003g02070.t01	Wine grape	nucleus	35.39	38.05
Zm00001d023736_P001	Maize	nucleus	39.09	36.97
VIT_00s0211g00180.t01	Wine grape	nucleus	33.74	36.61
VIT_18s0001g07900.t01	Wine grape	nucleus	35.39	35.83
VIT_17s0000g01230.t01	Wine grape	nucleus	32.92	34.04
VIT_12s0142g00360.t01	Wine grape	nucleus	35.8	31.75

Protein Annotations

EntrezGene:100257072	wikigene:100257072	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:CBI15339	ProteinID:CBI15339.3
ncoils:Coil	UniProt:D7SIM8	EMBL:FN594950	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009908	GO:GO:0009911	GO:GO:0009987	GO:GO:0010077	GO:GO:0010154	GO:GO:0040007
GO:GO:0043565	GO:GO:0045944	GO:GO:0046983	GO:GO:0060560	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	EntrezGene:LOC100257072	wikigene:LOC100257072	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF155
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00015CC098
ArrayExpress:VIT_17s0000g04990	EnsemblPlantsGene:VIT_17s0000g04990	EnsemblPlants:VIT_17s0000g04990.t01	unigene:Vvi.19667	RefSeq:XP_002263017	RefSeq:XP_002263017.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:5434018..5452725

Molecular Weight (calculated)

28067.4 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.840

Length

243 amino acids

Sequence
(BLAST)

001: MGRGRVQLKR IENKVNRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSTD SCMERILERY ERYAYAQSQL IATDLESQGS WTLEYAKLKA
101: RMEVLQKSQR NFMGEDLDSL SLKELQNLEQ QLDNSLKSTR TRKNQLMYES LSELHKKGKA LQEEHDLLTA KVQEKEKEQA EQAQWNQQNQ DLDSPSFLLQ
201: QPLHALNISG NCLARDSGDD QGIPPQNRTN TPLPAWMLRH VNK

Best Arabidopsis Sequence Match ( AT5G60910.1 )
(BLAST)

001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE

Arabidopsis Description

AGL8Agamous-like MADS-box protein AGL8 [Source:UniProtKB/Swiss-Prot;Acc:Q38876]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.