Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0020g04420.t01 | |
| VIT_17s0000g04990.t01 | |
| VIT_19s0014g00310.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G03710.1 | VIT_19s0014g00310.t01 | AT1G77980.1 | 15805477 |
| AT2G03710.1 | VIT_05s0020g04420.t01 | AT4G14640.1 | 17360592 |
| AT2G03710.1 | VIT_17s0000g04990.t01 | AT5G60910.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0083g01050.t01 | Wine grape | nucleus | 72.02 | 72.02 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 72.02 | 71.14 |
| KRH70973 | Soybean | nucleus | 69.96 | 69.67 |
| KRH75123 | Soybean | nucleus | 69.14 | 68.29 |
| VIT_14s0068g01800.t01 | Wine grape | nucleus | 17.7 | 67.19 |
| VIT_01s0010g03900.t01 | Wine grape | nucleus | 60.08 | 66.06 |
| Solyc04g005320.2.1 | Tomato | nucleus | 62.96 | 64.29 |
| PGSC0003DMT400072891 | Potato | nucleus | 60.49 | 60.74 |
| Solyc05g012020.2.1 | Tomato | nucleus | 60.08 | 60.33 |
| Bra025126.1-P | Field mustard | nucleus | 62.14 | 58.75 |
| CDY02978 | Canola | nucleus | 61.32 | 58.2 |
| AT2G03710.1 | Thale cress | nucleus | 61.73 | 58.14 |
| CDY51202 | Canola | nucleus | 60.91 | 57.59 |
| CDY04164 | Canola | nucleus | 60.91 | 57.36 |
| Bra026543.1-P | Field mustard | nucleus | 62.55 | 56.51 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 54.32 | 54.1 |
| Bra017376.1-P | Field mustard | nucleus | 52.26 | 52.26 |
| CDY33113 | Canola | nucleus | 60.91 | 47.9 |
| VIT_16s0022g02330.t01 | Wine grape | nucleus | 48.56 | 47.39 |
| CDY49686 | Canola | nucleus | 32.92 | 46.24 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 45.68 | 46.06 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 46.5 | 45.75 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 45.68 | 45.68 |
| CDY45709 | Canola | nucleus | 32.51 | 45.66 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 38.27 | 41.15 |
| VIT_18s0041g01880.t01 | Wine grape | nucleus | 36.63 | 39.91 |
| VIT_17s0000g01230.t01 | Wine grape | nucleus | 34.16 | 35.32 |
| VIT_00s0211g00180.t01 | Wine grape | nucleus | 32.51 | 35.27 |
| VIT_18s0001g07900.t01 | Wine grape | nucleus | 32.92 | 33.33 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 37.04 | 32.85 |
Protein Annotations
| EntrezGene:100232936 | wikigene:100232936 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AAP20093 | ProteinID:AAP20093.1 |
| EMBL:AM486601 | EMBL:AY256859 | ProteinID:CAN84110 | ProteinID:CAN84110.1 | ProteinID:CBI27319 | ProteinID:CBI27319.3 |
| ncoils:Coil | UniProt:D7T9Z7 | EMBL:FN595752 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | EntrezGene:LOC100232936 | wikigene:LOC100232936 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF352 | SMART:SM00432 | SUPFAM:SSF55455 | TIGR:TC59779 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI00015C7C4E | ArrayExpress:VIT_01s0011g00110 | EnsemblPlantsGene:VIT_01s0011g00110 | EnsemblPlants:VIT_01s0011g00110.t01 | unigene:Vvi.3506 |
| RefSeq:XP_002263410 | RefSeq:XP_002263410.2 | RefSeq:XP_003631165 | RefSeq:XP_003631165.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr1:-:194107..206427
Molecular Weight (calculated)
27747.1 Da
IEP (calculated)
8.296
GRAVY (calculated)
-0.643
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG SSMPETLERY QRCSYSALEA SQPAKETQNS YQEYLKLKSK
101: VEVLQRTQRN FLGEDLGHLG TKELEQLEHQ LDKSLKQIRS TKTQFMLDQL SDLQRKEQIL MEANNALRRK LGESSAESGL GSTWEAAAHN LPYNREPVQS
201: EDFFEPLQCD STLQIGYNPV LRVEMNGAST TQNVNGFIPG WMV
101: VEVLQRTQRN FLGEDLGHLG TKELEQLEHQ LDKSLKQIRS TKTQFMLDQL SDLQRKEQIL MEANNALRRK LGESSAESGL GSTWEAAAHN LPYNREPVQS
201: EDFFEPLQCD STLQIGYNPV LRVEMNGAST TQNVNGFIPG WMV
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L
Arabidopsis Description
SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.