Factsheet for Solyc05g012020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g005240.1.1
Solyc03g114830.2.1
Solyc05g051830.2.1
Solyc05g056620.1.1
Solyc06g053930.2.1
Solyc06g069430.2.1
Solyc10g017640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Solyc05g056620.1.1	AT1G69120.1	15805477
AT2G03710.1	Solyc05g051830.2.1	AT1G77980.1	15805477
AT2G03710.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT2G03710.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT2G03710.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT2G03710.1	Solyc03g114830.2.1	AT5G60910.1	15805477
AT2G03710.1	Solyc06g069430.2.1	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072891	Potato	nucleus	95.45	95.45
Solyc04g005320.2.1	Tomato	nucleus	71.07	72.27
KRH70973	Soybean	nucleus	63.22	62.7
Solyc03g114840.2.1	Tomato	nucleus	61.98	60.98
KRH75123	Soybean	nucleus	61.16	60.16
VIT_01s0011g00110.t01	Wine grape	nucleus	60.33	60.08
Solyc12g038510.1.1	Tomato	nucleus	59.5	57.6
Solyc05g015750.2.1	Tomato	nucleus	56.61	56.85
Solyc02g089200.2.1	Tomato	nucleus	57.02	56.1
CDY04164	Canola	nucleus	56.2	52.71
CDY51202	Canola	nucleus	55.79	52.53
CDY02978	Canola	nucleus	55.37	52.34
Bra025126.1-P	Field mustard	nucleus	55.37	52.14
AT2G03710.1	Thale cress	nucleus	55.37	51.94
Bra026543.1-P	Field mustard	nucleus	55.79	50.19
Bra017376.1-P	Field mustard	nucleus	47.52	47.33
Solyc01g093960.2.1	Tomato	nucleus	48.35	46.43
CDY33113	Canola	nucleus	55.79	43.69
Solyc11g028020.1.1	Tomato	nucleus	39.26	42.6
Solyc03g114830.2.1	Tomato	nucleus	42.98	42.11
Solyc03g019710.2.1	Tomato	nucleus	30.58	41.81
Solyc05g056620.1.1	Tomato	nucleus	41.74	41.39
Solyc06g069430.2.1	Tomato	nucleus	41.74	41.22
Solyc02g065730.1.1	Tomato	nucleus	38.84	40.17
Solyc02g089210.2.1	Tomato	nucleus	41.32	40.0
CDY45709	Canola	nucleus	26.86	37.57
Solyc02g091550.1.1	Tomato	nucleus	35.95	37.02
CDY49686	Canola	nucleus	26.45	36.99
Solyc02g071730.2.1	Tomato	nucleus	35.12	34.27
Solyc07g055920.2.1	Tomato	nucleus	37.19	33.71
Solyc01g106170.2.1	Tomato	mitochondrion	20.25	33.11
Solyc06g064840.2.1	Tomato	nucleus	23.14	27.86
Solyc04g076700.2.1	Tomato	nucleus	13.22	24.24
Solyc12g088090.1.1	Tomato	nucleus	18.18	19.82

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AF448522	ncoils:Coil	EMBL:DQ157795	EMBL:DQ157796
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF352	UniProt:Q8S4L4	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc05g012020.2
EnsemblPlants:Solyc05g012020.2.1	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A0E39	:

Description

MADS-box transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8S4L4]

Coordinates

chr5:-:5225203..5230962

Molecular Weight (calculated)

27970.1 Da

IEP (calculated)

8.005

GRAVY (calculated)

-0.790

Length

242 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEIALIIFSS RGKLYEFCSN SSMSKTLERY HRYNYGTLEG TQTSSDSQNN YQEYLKLKTR
101: VEMLQQSQRH LLGEDLGQLG TKDLEQLERQ LDSSLRQIRS TKTQHILDQL AELQQKEQSL TEMNKSLRIK LEELGVTFQT SWHCGEQSVQ YRHEQPSHHE
201: GFFQHVNCNN TLPISYGYDN VQPENAAPST HDATGVVPGW ML

Best Arabidopsis Sequence Match ( AT5G15800.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L

Arabidopsis Description

SEP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KB90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.