Factsheet for Solyc10g017640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g093960.2.1
Solyc01g106170.2.1
Solyc01g110530.2.1
Solyc02g089200.2.1
Solyc02g091550.1.1
Solyc03g114830.2.1
Solyc04g005320.2.1
Solyc04g076280.2.1
Solyc05g012020.2.1
Solyc05g056620.1.1
Solyc06g060980.1.1
Solyc06g069430.2.1
Solyc06g074170.2.1
Solyc06g074720.2.1
Solyc08g007160.2.1
Solyc08g077770.2.1
Solyc08g078860.2.1
Solyc10g017640.1.1
Solyc10g074680.1.1
Solyc11g032100.1.1
Solyc11g066630.1.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45660.1	Solyc05g056620.1.1	AT1G26310.1	11439126
AT2G45660.1	Solyc05g056620.1.1	AT1G26310.1	15805477
AT2G45660.1	Solyc05g056620.1.1	AT1G69120.1	11439126
AT2G45660.1	Solyc05g056620.1.1	AT1G69120.1	15805477
AT2G45660.1	Solyc05g056620.1.1	AT1G69120.1	21798944
AT2G45660.1	Solyc11g032100.1.1	AT1G71692.1	15805477
AT2G45660.1	Solyc04g005320.2.1	AT2G03710.1	15805477
AT2G45660.1	Solyc05g012020.2.1	AT2G03710.1	15805477
AT2G45660.1	Solyc01g110530.2.1	AT2G18040.1	20129060
AT2G45660.1	Solyc01g093960.2.1	AT2G45650.1	15805477
AT2G45660.1	Solyc10g017640.1.1	AT2G45660.1	15805477
AT2G45660.1	Solyc02g089200.2.1	AT3G02310.1	15805477
AT2G45660.1	Solyc10g074680.1.1	AT3G54220.1	19228333
AT2G45660.1	Solyc01g106170.2.1	AT3G57230.1	15805477
AT2G45660.1	Solyc01g093960.2.1	AT3G61120.1	15805477
AT2G45660.1	Solyc04g076280.2.1	AT4G24540.1	15805477
AT2G45660.1	Solyc02g091550.1.1	AT4G37940.1	15805477
AT2G45660.1	Solyc06g074720.2.1	AT5G04600.1	21798944
AT2G45660.1	Solyc11g066630.1.1	AT5G04600.1	21798944
AT2G45660.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT2G45660.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT2G45660.1	Solyc06g060980.1.1	AT5G47100.1	21798944
AT2G45660.1	Solyc08g007160.2.1	AT5G47100.1	21798944
AT2G45660.1	Solyc08g077770.2.1	AT5G47100.1	21798944
AT2G45660.1	Solyc08g078860.2.1	AT5G47570.1	21798944
AT2G45660.1	Solyc03g114830.2.1	AT5G60910.1	15805477
AT2G45660.1	Solyc06g069430.2.1	AT5G60910.1	15805477
AT2G45660.1	Solyc03g114830.2.1	AT5G60910.1	21798944
AT2G45660.1	Solyc06g069430.2.1	AT5G60910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G214600.1	Wheat	nucleus	80.33	79.03
Solyc06g035570.1.1	Tomato	nucleus	63.93	72.22
Zm00001d047355_P001	Maize	nucleus	83.61	68.0
TraesCS7D01G037000.1	Wheat	cytosol	57.38	57.38
Zm00001d042315_P001	Maize	nucleus	62.3	54.29
Zm00001d031625_P001	Maize	nucleus	57.38	43.75
HORVU6Hr1G002270.1	Barley	mitochondrion, nucleus	68.85	39.25
GSMUA_Achr2P11820_001	Banana	nucleus	80.33	35.25
HORVU3Hr1G095080.3	Barley	plastid	63.93	33.62
TraesCS3A01G434700.1	Wheat	nucleus	55.74	33.33
HORVU1Hr1G051660.10	Barley	nucleus	83.61	33.12
HORVU4Hr1G085450.1	Barley	nucleus	52.46	32.99
HORVU4Hr1G085370.1	Barley	nucleus	54.1	30.56
PGSC0003DMT400026576	Potato	nucleus	95.08	27.1
HORVU7Hr1G054390.1	Barley	nucleus	65.57	25.97
KRH00625	Soybean	nucleus	85.25	24.88
TraesCS3B01G469700.1	Wheat	nucleus	67.21	24.55
HORVU3Hr1G095240.2	Barley	nucleus	63.93	24.53
KRH40554	Soybean	nucleus	83.61	24.17
TraesCS3D01G427900.1	Wheat	nucleus	65.57	23.95
HORVU3Hr1G095200.4	Barley	nucleus	65.57	23.95
TraesCS3D01G428000.1	Wheat	nucleus	62.3	23.9
TraesCS3D01G427700.1	Wheat	mitochondrion, nucleus	63.93	23.49
Bra000393.1-P	Field mustard	nucleus	81.97	23.47
CDY60689	Canola	nucleus	81.97	23.47
Bra004928.1-P	Field mustard	nucleus	81.97	23.47
CDY69077	Canola	nucleus	81.97	23.47
Bra039324.1-P	Field mustard	nucleus	81.97	23.47
CDY53886	Canola	nucleus	81.97	23.47
CDY37054	Canola	nucleus	81.97	23.47
CDX74755	Canola	nucleus	81.97	23.47
CDY27368	Canola	nucleus	81.97	23.47
AT2G45660.1	Thale cress	nucleus	81.97	23.36
TraesCS3A01G434400.1	Wheat	nucleus	63.93	23.35
TraesCS3A01G434900.1	Wheat	nucleus	63.93	23.35
TraesCS1B01G214500.1	Wheat	nucleus	81.97	22.94
Solyc12g056460.1.1	Tomato	nucleus	77.05	22.82
TraesCS3B01G470000.1	Wheat	nucleus	62.3	22.75
TraesCS3A01G435000.1	Wheat	nucleus	62.3	22.75
GSMUA_Achr1P03630_001	Banana	nucleus	78.69	22.75
EES01980	Sorghum	nucleus	60.66	22.7
GSMUA_Achr5P10250_001	Banana	nucleus	80.33	22.69
Os08t0531900-01	Rice	nucleus	67.21	22.4
Os01t0922800-01	Rice	nucleus	59.02	21.95
Solyc08g080100.2.1	Tomato	nucleus	80.33	21.88
TraesCS5A01G515500.1	Wheat	nucleus	78.69	21.82
KXG39016	Sorghum	nucleus	80.33	21.68
OQU86329	Sorghum	nucleus	60.66	21.64
TraesCS4B01G346700.1	Wheat	nucleus	78.69	21.62
TraesCS4D01G341700.1	Wheat	nucleus	78.69	21.62
TraesCS4B01G351500.1	Wheat	nucleus	57.38	21.34
TraesCS1A01G199600.2	Wheat	nucleus	80.33	21.3
TraesCS1D01G203300.2	Wheat	nucleus	80.33	21.3
Zm00001d039913_P002	Maize	nucleus	60.66	21.26
TraesCS1D01G203400.1	Wheat	nucleus	80.33	21.21
Zm00001d048474_P001	Maize	nucleus	80.33	21.12
Zm00001d027425_P001	Maize	nucleus	78.69	21.05
OQU93352	Sorghum	nucleus	80.33	21.03
Os03t0122600-01	Rice	nucleus	78.69	20.87
HORVU7Hr1G054320.2	Barley	nucleus	65.57	20.62
TraesCS1A01G199900.1	Wheat	nucleus	77.05	20.61
KRH65189	Soybean	nucleus	78.69	20.25
TraesCS7A01G260900.1	Wheat	nucleus	67.21	20.0
TraesCS3A01G432900.1	Wheat	mitochondrion, nucleus	54.1	19.88
Os10t0536100-01	Rice	nucleus	75.41	19.74
TraesCS7B01G158900.1	Wheat	nucleus	67.21	18.89
HORVU6Hr1G002330.14	Barley	nucleus	59.02	18.75
TraesCS7D01G261900.1	Wheat	nucleus	67.21	18.72
TraesCS5A01G520200.1	Wheat	nucleus, plastid	60.66	18.32
TraesCS4D01G346300.1	Wheat	nucleus	60.66	17.87
Os06t0108500-01	Rice	nucleus	62.3	17.84
Solyc03g006830.2.1	Tomato	nucleus	62.3	17.12
TraesCS6B01G017900.1	Wheat	nucleus	68.85	16.28
TraesCS6D01G014600.1	Wheat	nucleus	68.85	16.22
TraesCS6A01G011700.1	Wheat	nucleus	68.85	16.03
KXG25532	Sorghum	nucleus, plastid	65.57	15.94
HORVU3Hr1G095090.1	Barley	cytosol, mitochondrion, nucleus	63.93	11.57
Solyc01g092950.2.1	Tomato	extracellular	6.56	1.93
Solyc10g017630.1.1	Tomato	nucleus	3.28	1.15
Zm00001d047356_P002	Maize	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K4CYP2
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc10g017640.1	EnsemblPlants:Solyc10g017640.1.1	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000276C39D	:	:	:	:

Description

No Description!

Coordinates

chr10:-:5605661..5605846

Molecular Weight (calculated)

7032.6 Da

IEP (calculated)

11.236

GRAVY (calculated)

-0.418

Length

61 amino acids

Sequence
(BLAST)

1: MVRGKTEMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVGLVILSP RDKLYEFSTS R

Best Arabidopsis Sequence Match ( AT4G22950.2 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKV QF

Arabidopsis Description

AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.