Factsheet for Solyc10g074680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111080.2.1
Solyc02g081120.2.1
Solyc02g092370.1.1
Solyc04g007800.2.1
Solyc05g006960.2.1
Solyc06g005060.2.1
Solyc06g009960.1.1
Solyc06g009970.2.1
Solyc06g053390.2.1
Solyc06g075250.2.1
Solyc07g053570.2.1
Solyc07g054630.2.1
Solyc08g068540.2.1
Solyc08g069110.2.1
Solyc09g007550.2.1
Solyc09g091280.2.1
Solyc10g017640.1.1
Solyc10g074680.1.1
Solyc10g084180.1.1
Solyc11g027880.1.1
Solyc11g069700.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54220.1	Solyc07g053570.2.1	AT1G03840.1	17785527
AT3G54220.1	Solyc06g005060.2.1	AT1G07920.1	19228333
AT3G54220.1	Solyc06g009960.1.1	AT1G07920.1	19228333
AT3G54220.1	Solyc06g009970.2.1	AT1G07920.1	19228333
AT3G54220.1	Solyc11g069700.1.1	AT1G07920.1	19228333
AT3G54220.1	Solyc06g005060.2.1	AT1G07930.1	19228333
AT3G54220.1	Solyc06g009960.1.1	AT1G07930.1	19228333
AT3G54220.1	Solyc06g009970.2.1	AT1G07930.1	19228333
AT3G54220.1	Solyc11g069700.1.1	AT1G07930.1	19228333
AT3G54220.1	Solyc05g006960.2.1	AT1G27050.1	19228333
AT3G54220.1	Solyc02g081120.2.1	AT1G62360.1	17785527
AT3G54220.1	Solyc11g027880.1.1	AT1G72160.1	19228333
AT3G54220.1	Solyc01g111080.2.1	AT1G75750.1	19228333
AT3G54220.1	Solyc08g069110.2.1	AT1G78570.1	19228333
AT3G54220.1	Solyc04g007800.2.1	AT2G01540.1	19228333
AT3G54220.1	Solyc06g053390.2.1	AT2G01540.1	19228333
AT3G54220.1	Solyc10g017640.1.1	AT2G45660.1	19228333
AT3G54220.1	Solyc09g091280.2.1	AT3G12280.1	22921914
AT3G54220.1	Solyc07g054630.2.1	AT3G18960.1	19228333
AT3G54220.1	Solyc08g068540.2.1	AT3G18960.1	19228333
AT3G54220.1	Solyc10g074680.1.1	AT3G54220.1	17785527
AT3G54220.1	Solyc02g092370.1.1	AT4G37650.1	17446396
AT3G54220.1	Solyc02g092370.1.1	AT4G37650.1	17785527
AT3G54220.1	Solyc02g092370.1.1	AT4G37650.1	18500650
AT3G54220.1	Solyc02g092370.1.1	AT4G37650.1	22921914
AT3G54220.1	Solyc06g075250.2.1	AT5G03150.1	17785527
AT3G54220.1	Solyc09g007550.2.1	AT5G03150.1	17785527
AT3G54220.1	Solyc10g084180.1.1	AT5G03150.1	17785527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043358	Potato	cytosol	96.61	96.61
Bra007056.1-P	Field mustard	mitochondrion, plastid	32.69	85.44
KXG22896	Sorghum	cytosol, plasma membrane	44.07	69.07
CDX78219	Canola	nucleus, plastid	49.52	67.83
CDX73496	Canola	nucleus, plastid	50.73	67.36
GSMUA_Achr11P...	Banana	plastid	44.92	64.63
AT3G54220.1	Thale cress	nucleus, plastid	50.61	64.01
HORVU5Hr1G045920.2	Barley	cytosol	44.31	62.56
VIT_08s0056g00050.t01	Wine grape	nucleus	58.84	62.15
TraesCS4A01G191300.1	Wheat	cytosol	45.88	61.43
Os11t0124300-01	Rice	nucleus, plastid	47.09	59.75
Zm00001d052380_P001	Maize	plastid	48.31	59.73
TraesCS5B01G143100.1	Wheat	plastid	45.64	59.09
Os12t0122000-01	Rice	plastid	46.97	58.79
TraesCS5A01G144000.1	Wheat	plastid	45.52	58.02
TraesCS5D01G148000.1	Wheat	plastid	45.64	57.73
TraesCS4B01G124000.1	Wheat	plastid	46.61	56.7
Zm00001d005029_P001	Maize	plastid	46.49	56.64
TraesCS4D01G122000.1	Wheat	plastid	46.49	56.55
GSMUA_Achr8P09400_001	Banana	cytosol	46.0	56.55
OQU82754	Sorghum	plastid	48.18	55.98
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	45.4	53.04
Solyc07g043330.1.1	Tomato	plastid	27.6	52.78
KRH40615	Soybean	nucleus, plastid	52.42	52.61
KRH00551	Soybean	nucleus, plastid	52.3	51.31
Solyc09g066450.1.1	Tomato	cytosol	25.42	42.0
Solyc12g099900.1.1	Tomato	nucleus	18.16	32.05
Solyc07g066250.1.1	Tomato	nucleus	16.46	31.78
Solyc01g008910.2.1	Tomato	cytosol	17.8	30.88
Solyc03g110950.1.1	Tomato	cytosol	17.8	27.74
Solyc11g011260.1.1	Tomato	nucleus	19.49	27.38
Solyc11g017100.1.1	Tomato	cytosol	15.74	27.31
Solyc10g086380.1.1	Tomato	nucleus	16.22	26.12
Solyc10g086370.1.1	Tomato	nucleus	15.98	25.88
Solyc02g094340.1.1	Tomato	nucleus	20.7	25.15
Solyc08g080400.1.1	Tomato	plastid	20.22	24.59
Solyc02g085340.1.1	Tomato	cytosol	17.19	23.32

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008356	GO:GO:0009058	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630
GO:GO:0009956	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048366	GO:GO:0051457
GO:GO:0090610	InterPro:IPR005202	UniProt:K4D1R0	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF12	EnsemblPlantsGene:Solyc10g074680.1	EnsemblPlants:Solyc10g074680.1.1	InterPro:TF_GRAS	UniParc:UPI0002769A50	SEG:seg

Description

Protein SCARECROW [Source:Projected from Arabidopsis thaliana (AT3G54220) UniProtKB/Swiss-Prot;Acc:Q9M384]

Coordinates

chr10:-:58229454..58233218

Molecular Weight (calculated)

90059.8 Da

IEP (calculated)

6.410

GRAVY (calculated)

-0.431

Length

826 amino acids

Sequence
(BLAST)

001: MAKALPVSGE NCTGVNVVGD SSGEKTSKQL FHCENGKMVR KRAASDMEIQ TGAGEEHRYL RRPAMIGGSH SQVGDSRVCG NSNFGHGMNS NLTTTMTMTT
101: QVSNYSTMQM LPSSTNLCGV TSRGGPGIDT GFSNSTPNLT YTDAITSHHQ PQGTQTQNNN SQSPSVCVFS GLPLFPPDRN RQNSGLLLQQ PPAAAAAVVS
201: SPLTTGRIDS MEDSTSATAW IDSIIKDLIN SSAQVSVPQL IQNVREIIHP CNPYLASLLE YRLRSLTSNN NGGADQNDPM ECWRRKESLP AQLAGLQQAQ
301: NNANLLQHNI LSLPDSSNNQ YLNWDIALPN SHNAPVAPSH NQHQQLGGNN PTATDLSFVT LSPQVQQQQQ QQQQESPHSH SQQQAAVDLD QQQKQQQSSS
401: SLSPTSVADN SAKTKTSTPA PPVPINTYRE KKEEERQQKR DEEGLHLLTL LLQCAEAVSA DNLEEANKML LEVSELSTPF GTSAQRVAAY FSEAMSARLL
501: NSCLGIYAAL PMTSVPMLYT QKMASAFQVF NGISPFIKFS HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPYVRL TGLGTSMDAL
601: EATGKRLSDF AERLGLPFEF LPVADKVGNL DPEKLNVSKR EAVAVHWLQH SLYDVTGSDP NTLSLLQRLA PKVVTVVEQD LSHAGSFLGR FVEAIHYYSA
701: LFDSLGACYG EESEERHVVE QQLLSKEIRN VLAVGGPSRS GDAKFNNWRE KLQQSGFRSL SLAGNAAAQA TLLLGMFPSH GYTLVEDNGT LKLGWKDLCL
801: FTASAWRPNS LHAAPGSRHF SRPNMD

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.