CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87860
EER94653
EER95078
EER95086
EER97442
EES01097
EES01452
EES01980
EES02157
EES10230
EES13089
EES14166
EES18282
EES19838
KXG20293
KXG20294
KXG20296
KXG20299
KXG21076
KXG21918
KXG22896
KXG25532
KXG26019
KXG33790
KXG39016
OQU75582
OQU75597
OQU78068
OQU78328
OQU82754
OQU83580
OQU86329
OQU87658
OQU90176
OQU93352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54220.1	EER97442	AT1G03840.1	17785527
AT3G54220.1	EES02157	AT1G03840.1	17785527
AT3G54220.1	KXG20293	AT1G07920.1	19228333
AT3G54220.1	KXG20294	AT1G07920.1	19228333
AT3G54220.1	KXG20296	AT1G07920.1	19228333
AT3G54220.1	KXG20299	AT1G07920.1	19228333
AT3G54220.1	OQU75582	AT1G07920.1	19228333
AT3G54220.1	OQU75597	AT1G07920.1	19228333
AT3G54220.1	KXG20293	AT1G07930.1	19228333
AT3G54220.1	KXG20294	AT1G07930.1	19228333
AT3G54220.1	KXG20296	AT1G07930.1	19228333
AT3G54220.1	KXG20299	AT1G07930.1	19228333
AT3G54220.1	OQU75582	AT1G07930.1	19228333
AT3G54220.1	OQU75597	AT1G07930.1	19228333
AT3G54220.1	OQU87658	AT1G27050.1	19228333
AT3G54220.1	EES10230	AT1G72160.1	19228333
AT3G54220.1	KXG33790	AT1G72160.1	19228333
AT3G54220.1	OQU78068	AT1G72160.1	19228333
AT3G54220.1	EES13089	AT1G75750.1	19228333
AT3G54220.1	EES18282	AT1G75750.1	19228333
AT3G54220.1	KXG21918	AT1G75750.1	19228333
AT3G54220.1	EER95078	AT1G78570.1	19228333
AT3G54220.1	EER95086	AT1G78570.1	19228333
AT3G54220.1	EES01097	AT2G01540.1	19228333
AT3G54220.1	EER87860	AT2G19760.1	21798944
AT3G54220.1	EES01452	AT2G19760.1	21798944
AT3G54220.1	EES19838	AT2G19760.1	21798944
AT3G54220.1	OQU78328	AT2G19760.1	21798944
AT3G54220.1	EES01980	AT2G45660.1	19228333
AT3G54220.1	KXG25532	AT2G45660.1	19228333
AT3G54220.1	KXG39016	AT2G45660.1	19228333
AT3G54220.1	OQU86329	AT2G45660.1	19228333
AT3G54220.1	OQU93352	AT2G45660.1	19228333
AT3G54220.1	EES14166	AT3G12280.1	22921914
AT3G54220.1	KXG21076	AT3G12280.1	22921914
AT3G54220.1	KXG26019	AT3G12280.1	22921914
AT3G54220.1	OQU83580	AT3G12280.1	22921914
AT3G54220.1	KXG22896	AT3G54220.1	17785527
AT3G54220.1	OQU82754	AT3G54220.1	17785527
AT3G54220.1	EER87860	AT4G29350.1	21798944
AT3G54220.1	EES01452	AT4G29350.1	21798944
AT3G54220.1	EES19838	AT4G29350.1	21798944
AT3G54220.1	OQU78328	AT4G29350.1	21798944
AT3G54220.1	EER94653	AT4G37650.1	17446396
AT3G54220.1	OQU90176	AT4G37650.1	17446396
AT3G54220.1	EER94653	AT4G37650.1	17785527
AT3G54220.1	OQU90176	AT4G37650.1	17785527
AT3G54220.1	EER94653	AT4G37650.1	18500650
AT3G54220.1	OQU90176	AT4G37650.1	18500650
AT3G54220.1	EER94653	AT4G37650.1	22921914
AT3G54220.1	OQU90176	AT4G37650.1	22921914
AT3G54220.1	EER87860	AT5G56600.1	21798944
AT3G54220.1	EES01452	AT5G56600.1	21798944
AT3G54220.1	EES19838	AT5G56600.1	21798944
AT3G54220.1	OQU78328	AT5G56600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052380_P001	Maize	plastid	88.05	93.71
KXG22896	Sorghum	cytosol, plasma membrane	66.1	89.18
Os11t0124300-01	Rice	nucleus, plastid	76.37	83.41
Os12t0122000-01	Rice	plastid	77.36	83.33
HORVU5Hr1G045920.2	Barley	cytosol	68.5	83.25
TraesCS5B01G143100.1	Wheat	plastid	73.84	82.29
TraesCS5A01G144000.1	Wheat	plastid	74.4	81.64
TraesCS5D01G148000.1	Wheat	plastid	74.68	81.32
TraesCS4A01G191300.1	Wheat	cytosol	69.76	80.39
Bra007056.1-P	Field mustard	mitochondrion, plastid	35.44	79.75
TraesCS4D01G122000.1	Wheat	plastid	74.82	78.35
TraesCS4B01G124000.1	Wheat	plastid	74.54	78.06
GSMUA_Achr11P...	Banana	plastid	52.32	64.81
CDX78219	Canola	nucleus, plastid	51.76	61.03
CDX73496	Canola	nucleus, plastid	52.6	60.13
GSMUA_Achr8P09400_001	Banana	cytosol	54.57	57.74
AT3G54220.1	Thale cress	nucleus, plastid	53.02	57.73
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	54.43	54.74
KXG36498	Sorghum	cytosol, plastid	34.32	53.04
VIT_08s0056g00050.t01	Wine grape	nucleus	56.68	51.53
Solyc10g074680.1.1	Tomato	cytosol	55.98	48.18
PGSC0003DMT400043358	Potato	cytosol	55.7	47.94
KRH40615	Soybean	nucleus, plastid	53.59	46.29
KRH00551	Soybean	nucleus, plastid	53.73	45.37
OQU83473	Sorghum	cytosol	22.64	38.15
EES18409	Sorghum	cytosol	24.47	35.29
OQU87235	Sorghum	extracellular	14.06	33.9
EES02045	Sorghum	cytosol, plastid	20.96	32.46
KXG29713	Sorghum	cytosol	16.74	29.97
OQU81603	Sorghum	cytosol	13.64	27.09
OQU76691	Sorghum	cytosol, extracellular	17.58	26.71
EES16518	Sorghum	cytosol	16.88	26.67
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	20.96	26.65
EES01920	Sorghum	cytosol	20.11	26.63
EER93592	Sorghum	cytosol	23.07	26.16
EES09233	Sorghum	cytosol	17.44	25.46
KXG23987	Sorghum	cytosol	18.42	24.95
EER87757	Sorghum	mitochondrion	22.08	24.65
KXG22822	Sorghum	mitochondrion	18.42	22.7
OQU77884	Sorghum	plasma membrane	14.49	22.64
OQU77885	Sorghum	cytosol	15.33	22.61

Protein Annotations

EnsemblPlants:OQU82754	EnsemblPlantsGene:SORBI_3005G017500	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	ncoils:Coil
PANTHER:PTHR31636	PANTHER:PTHR31636:SF12	PFAM:PF03514	PFscan:PS50985	ProteinID:OQU82754	ProteinID:OQU82754.1
SEG:seg	UniParc:UPI000B42396E	UniProt:A0A1Z5RG85	MapMan:15.5.12	MapMan:26.3.1.5	:

Description

hypothetical protein

Coordinates

chr5:+:1574101..1577978

Molecular Weight (calculated)

75098.0 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.171

Length

711 amino acids

Sequence
(BLAST)

001: MGSSSLLLFP SSSSAASTAP HAFPHSHATA TASTSTSTSL LPPLPSPHHL PLPPPSSSSQ SQDHFLLHYL HQLDRQEAAA AAAMVRKRPA QDMDLPPPRR
101: HVTGDLSDVT AAAAGSGGAP PSSASAQLPA LPTQLHQLPP AFQHHAAEVG VPVPAPPPPP PNPAAHAQAG GEAAASTTAW VDGIIRDIIG SSGGAAVSIT
201: QLIHNVREII HPCNPGLASL LELRLRSLLA ADPAPLPPPP PQPSQQHALL HGVGAPAAAA GLTLPPPPPL QDKRRHEPPP PPPPPQQQQQ EEPHPASQSP
301: KAPTAEETAA AAAAAAAAAA AAAKERKEEQ RRKQRDEEGL HLLTLLLQCA EAVNADNLDD AHQTLLEIAE LATPFGTSTQ RVAAYFAEAM SARLVSSCLG
401: LYAPLPPGTP AAARLHGRVA AAFQVFNGIS PFVKFSHFTA NQAIQEAFER EERVHIIDLD IMQGLQWPGL FHILASRPGG PPRVRLTGLG ASMEALEATG
501: KRLSDFADTL GLPFEFCAVA EKAGNVDPEK LGVTRREAVA VHWLHHSLYD VTGSDSNTLW LIQRLAPKVV TMVEQDLSHS GSFLARFVEA IHYYSALFDS
601: LDASYGEDSP ERHVVEQQLL SREIRNVLAV GGPARTGDVK FGSWREKLAQ SGFRAASLAG SAAAQASLLL GMFPSDGYTL VEENGALKLG WKDLCLLTAS
701: AWRPIQMPPC R

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.