CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, mitochondrion

Predictor Summary:

plastid 1
cytosol 2
golgi 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95078
EER95086
EES07456
KXG22896
OQU82754

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	EES07456	AT1G63000.1	21798944
AT1G78570.1	EER95078	AT1G78570.1	21798944
AT1G78570.1	EER95086	AT1G78570.1	21798944
AT1G78570.1	KXG22896	AT3G54220.1	19228333
AT1G78570.1	OQU82754	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95086	Sorghum	cytosol, mitochondrion, plastid	98.36	98.36
Zm00001d028654_P002	Maize	cytosol	96.73	96.73
Os03t0278200-01	Rice	nucleus, plasma membrane	93.9	93.48
TraesCS4A01G099200.1	Wheat	cytosol	92.41	92.0
TraesCS4D01G206000.1	Wheat	mitochondrion	92.41	91.06
TraesCS4B01G205100.3	Wheat	mitochondrion	92.26	90.91
HORVU4Hr1G059120.2	Barley	plastid	92.11	85.62
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	83.78	84.16
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	79.46	83.96
CDX97601	Canola	cytosol, mitochondrion, plastid	80.51	83.75
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	82.74	83.61
CDX98494	Canola	cytosol, mitochondrion, plastid	80.36	83.59
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	83.33	83.58
CDY20084	Canola	cytosol, mitochondrion, peroxisome	79.91	83.39
CDY32340	Canola	cytosol, mitochondrion, peroxisome	79.76	83.36
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	79.61	83.07
AT3G14790.2	Thale cress	mitochondrion	82.29	82.91
CDY40003	Canola	cytosol, mitochondrion, plastid	82.14	82.39
CDY45116	Canola	cytosol, mitochondrion, peroxisome	80.95	81.8
CDY24092	Canola	cytosol, mitochondrion, peroxisome	80.95	81.8
CDY35137	Canola	cytosol, mitochondrion, plastid	81.55	81.79
CDY60210	Canola	cytosol, mitochondrion, peroxisome	81.25	81.74
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	81.1	81.59
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	80.65	81.5
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	80.8	81.41
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	81.4	81.4
CDY25850	Canola	cytosol, mitochondrion, peroxisome	51.64	81.07
KXG21627	Sorghum	mitochondrion	82.74	81.05
CDX88455	Canola	cytosol, peroxisome, plastid	83.63	79.49
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	76.64	78.39
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	74.85	76.91
Solyc08g069110.2.1	Tomato	unclear	74.4	76.8
EES07456	Sorghum	cytosol, peroxisome, plastid	34.82	76.22
KRH04933	Soybean	cytosol, mitochondrion, plastid	72.02	75.16
KRH16155	Soybean	cytosol	73.07	74.96
EER94859	Sorghum	extracellular, golgi	13.24	25.07
EER98731	Sorghum	plastid	13.24	24.32
KXG36042	Sorghum	cytosol	12.2	22.53
EER95001	Sorghum	mitochondrion	13.39	22.11
EER95854	Sorghum	mitochondrion, plastid	13.54	21.16
OQU75981	Sorghum	endoplasmic reticulum	13.69	20.91
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	13.1	20.8
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	13.39	20.5
KXG27129	Sorghum	mitochondrion, plastid	12.65	20.48
EES14210	Sorghum	cytosol, extracellular, golgi, plastid	13.54	19.0
EER95171	Sorghum	plastid	13.39	18.75
EER99141	Sorghum	cytosol, endoplasmic reticulum, golgi, plastid	13.24	18.02

Protein Annotations

MapMan:3.13.6.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EntrezGene:8084911	UniProt:C5WPC1	EnsemblPlants:EER95078
ProteinID:EER95078	ProteinID:EER95078.1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF04321	PFAM:PF16363
PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	InterPro:RmlD-like-bd	EnsemblPlantsGene:SORBI_3001G416600	SUPFAM:SSF51735	unigene:Sbi.15344
UniParc:UPI0001A830C6	RefSeq:XP_002468080.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:69795047..69798353

Molecular Weight (calculated)

76002.9 Da

IEP (calculated)

7.249

GRAVY (calculated)

-0.357

Length

672 amino acids

Sequence
(BLAST)

001: MATYEPKNIL ITGAAGFIAS HVANRLVRNY PHYKIVVLDK LDYCSSLKNL NPSRASQNLK FVKGDIASAD LVNHLLVTES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG LPLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTVKERRVID VAKDICRLFD LDTEKVIRFV ENRPFNDQRY FLDDQKLKRL
301: GWAERTPWEE GLKKTIEWYT TNPDYWGDVT GALLPHPRML MTPGVERHNW TEEIKSLTSS PAEASTTAPA TSTKRATDAP QKPLFKFLIY GRTGWIGGLL
401: GKICEKQGIP YEYGKGRLEE RSQLLEDIRN VKPTHVFNAA GVTGRPNVDW CETHKQDTIR TNVVGTLNLA DICREQGLLM VNYATGCIFE YDAKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLSNPR NFITKIARYD KVVNIPNSMT ILDELLPISI EMAKRDCRGI WNFTNPGVVS
601: HNEILEMYKK YINPDFKWTN FTLEEQAKVI VARRSNNEMD ASKLKAEFPQ LLSIKDSLIK YVFEPNRKVP AI

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [cytosol,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.