Factsheet for Bra035048.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

plastid 3
cytosol 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P
Bra019776.1-P
Bra027005.1-P
Bra035048.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	Bra019776.1-P	AT1G63000.1	21798944
AT1G78570.1	Bra027005.1-P	AT1G63000.1	21798944
AT1G78570.1	Bra035048.1-P	AT1G78570.1	21798944
AT1G78570.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	94.48	94.62
CDX88455	Canola	cytosol, peroxisome, plastid	98.36	93.21
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	90.9	90.62
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	86.42	87.07
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	82.99	86.34
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	83.43	86.13
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	85.82	86.08
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	85.22	85.86
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	80.0	84.28
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	83.88	83.63
TraesCS4A01G099200.1	Wheat	cytosol	84.18	83.56
EER95086	Sorghum	cytosol, mitochondrion, plastid	83.73	83.48
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	77.31	83.41
Os03t0278200-01	Rice	nucleus, plasma membrane	84.03	83.41
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	83.58	83.33
TraesCS4D01G206000.1	Wheat	mitochondrion	84.18	82.7
TraesCS4B01G205100.3	Wheat	mitochondrion	84.03	82.55
Zm00001d028654_P002	Maize	cytosol	82.69	82.44
Bra027005.1-P	Field mustard	cytosol	35.37	79.8
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	77.61	79.15
HORVU4Hr1G059120.2	Barley	plastid	84.18	78.01
Solyc08g069110.2.1	Tomato	unclear	75.67	77.88
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	75.82	77.68
KRH04933	Soybean	cytosol, mitochondrion, plastid	74.03	77.02
KRH16155	Soybean	cytosol	75.22	76.95
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	69.25	76.69
Bra019776.1-P	Field mustard	cytosol	36.12	75.39
Bra030933.1-P	Field mustard	cytosol	20.45	74.05
Bra027732.1-P	Field mustard	golgi	13.73	26.82
Bra019257.1-P	Field mustard	plastid	13.73	26.44
Bra013744.1-P	Field mustard	cytosol, golgi	13.13	25.29
Bra019785.1-P	Field mustard	cytosol	12.54	25.07
Bra016757.1-P	Field mustard	cytosol	13.13	25.07
Bra035262.1-P	Field mustard	golgi	12.84	24.78
Bra027626.1-P	Field mustard	cytosol	12.69	24.22
Bra039253.1-P	Field mustard	cytosol	12.39	23.92
Bra020917.1-P	Field mustard	golgi, mitochondrion	13.88	22.63
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	14.18	21.84
Bra032409.1-P	Field mustard	mitochondrion	13.58	21.72
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.88	21.68
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	13.73	21.4
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.88	21.38
Bra033746.1-P	Field mustard	golgi	12.99	21.12
Bra027557.1-P	Field mustard	golgi	12.84	20.87
Bra014987.1-P	Field mustard	endoplasmic reticulum	13.88	20.48
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.73	20.18
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	12.84	20.05
Bra013466.1-P	Field mustard	mitochondrion	13.73	19.87
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	13.43	19.57
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	12.54	19.53
Bra005387.1-P	Field mustard	golgi, mitochondrion	13.13	19.38

Protein Annotations

MapMan:3.13.6.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra035048	EnsemblPlants:Bra035048.1	EnsemblPlants:Bra035048.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009719	GO:GO:0009987	GO:GO:0010253
GO:GO:0010280	GO:GO:0010315	GO:GO:0030154	GO:GO:0042127	GO:GO:0050377	GO:GO:0051555
UniProt:M4F1V1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF04321	PFAM:PF16363	PANTHER:PTHR43000
PANTHER:PTHR43000:SF8	InterPro:RmlD-like-bd	SUPFAM:SSF51735	UniParc:UPI0002541C53	SEG:seg	:

Description

AT1G78570 (E=0.0) RHM1, ROL1, ATRHM1 | RHM1 (RHAMNOSE BIOSYNTHESIS 1); UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic

Coordinates

chrA07:+:21942634..21944997

Molecular Weight (calculated)

75338.0 Da

IEP (calculated)

7.301

GRAVY (calculated)

-0.398

Length

670 amino acids

Sequence
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRTY PHYKIVVLDK LDYCSNLKNL NPSKNSPSFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQVRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG KVLPIHGDGS NVRSYLYCED VAEAFEVILH KGEVGHVYNI GTKKERRVND VARDVCKLFG MDPEASIKFV ENRPFNDQRY FLDDEKLKKL
301: GWSERTTWEE GLKKTMEWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SDEISSAASV SDKPSQTHMV VPSTRSSTST PQKPSLKFLI YGKTGWIGGL
401: LGKLCEKQGI AYEYGKGRLE DRASLLQDVM SVKPTHVFNS AGVTGRPNVD WCESHKTETI RANVAGTLTL ADVCREHGLL MMNFATGCIF EYDEKHPEGS
501: GVGFKEEDTP NFTGSFYSKT KAMVEELLKE YDNVCTLRVR MPISSDLNNP RNFITKISRY NKGVNSPNSM TVLDELFPIS IEMAKRNLKG IWNFTNPGVV
601: SHNEILEMYR DYINPEFKWA NFTLEEQAKV IVAPRSNNEM DASKLKKEFP ELLSIKESLI KYAFEPNKKT

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [cytosol,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.