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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • plastid 3
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73496
CDX78219
CDX88455
CDX98052
CDY45471
CDY45969
CDY57072

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78570.1 CDX98052 AT1G63000.1 21798944
AT1G78570.1 CDY45471 AT1G63000.1 21798944
AT1G78570.1 CDY45969 AT1G63000.1 21798944
AT1G78570.1 CDY57072 AT1G63000.1 21798944
AT1G78570.1 CDX88455 AT1G78570.1 21798944
AT1G78570.1 CDX73496 AT3G54220.1 19228333
AT1G78570.1 CDX78219 AT3G54220.1 19228333
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035048.1-P Field mustard cytosol, mitochondrion, plastid 93.21 98.36
CDY71423 Canola cytosol, nucleus 59.69 97.91
AT1G78570.1 Thale cress cytosol, mitochondrion, peroxisome 89.39 94.47
CDY40003 Canola cytosol, mitochondrion, plastid 87.41 92.24
CDY35137 Canola cytosol, mitochondrion, plastid 86.85 91.64
CDX97601 Canola cytosol, mitochondrion, plastid 80.34 87.93
CDX98494 Canola cytosol, mitochondrion, plastid 80.2 87.77
CDY45116 Canola cytosol, mitochondrion, peroxisome 81.9 87.07
CDY60210 Canola cytosol, mitochondrion, peroxisome 82.18 86.98
CDY20084 Canola cytosol, mitochondrion, peroxisome 79.07 86.8
GSMUA_Achr4P10430_001 Banana cytosol, extracellular, mitochondrion 79.63 86.75
CDY32340 Canola cytosol, mitochondrion, peroxisome 78.78 86.63
CDY24092 Canola cytosol, mitochondrion, peroxisome 81.47 86.62
CDY25850 Canola cytosol, mitochondrion, peroxisome 52.33 86.45
GSMUA_Achr10P... Banana cytosol, mitochondrion, plastid 75.95 84.43
Zm00001d047796_P003 Maize extracellular, nucleus, plasma membrane 79.77 83.93
EER95086 Sorghum cytosol, mitochondrion, plastid 79.63 83.78
Os03t0278200-01 Rice nucleus, plasma membrane 79.92 83.7
TraesCS4A01G099200.1 Wheat cytosol 79.92 83.7
EER95078 Sorghum cytosol, mitochondrion, peroxisome 79.49 83.63
GSMUA_Achr3P31810_001 Banana cytosol, mitochondrion, peroxisome 73.41 83.57
TraesCS4D01G206000.1 Wheat mitochondrion 79.92 82.84
Zm00001d028654_P002 Maize cytosol 78.64 82.74
TraesCS4B01G205100.3 Wheat mitochondrion 79.77 82.7
CDY45969 Canola cytosol 33.8 80.47
CDY45471 Canola cytosol 33.66 80.13
VIT_04s0069g00830.t01 Wine grape cytosol, mitochondrion, plastid 73.69 79.3
HORVU4Hr1G059120.2 Barley plastid 80.48 78.7
Solyc08g069110.2.1 Tomato unclear 71.85 78.03
PGSC0003DMT400075973 Potato cytosol, mitochondrion, peroxisome 72.14 77.98
KRH04933 Soybean cytosol, mitochondrion, plastid 70.58 77.48
KRH16155 Soybean cytosol 71.57 77.25
GSMUA_Achr3P31820_001 Banana cytosol, mitochondrion, plastid 65.63 76.69
CDY57072 Canola cytosol, extracellular, peroxisome 33.95 74.3
CDX98052 Canola cytosol 33.52 73.37
CDX81794 Canola plastid 34.37 70.03
CDY72469 Canola cytosol 11.74 62.88
CDY47846 Canola golgi 13.01 26.82
CDY71965 Canola cytosol, mitochondrion 8.91 26.47
CDY08378 Canola golgi 12.87 26.38
CDY50431 Canola cytosol 12.73 25.86
CDY47611 Canola golgi 12.59 25.57
CDY03506 Canola cytosol, golgi 12.59 25.57
CDY31278 Canola cytosol 12.59 25.36
CDY21065 Canola cytosol 12.59 25.36
CDY40862 Canola cytosol, golgi 12.16 24.78
CDX86828 Canola golgi 12.16 24.78
CDY69000 Canola cytosol 11.74 24.78
CDY49193 Canola cytosol 12.16 24.5
CDY47346 Canola cytosol 12.16 24.5
CDX78998 Canola mitochondrion 13.15 22.63
CDX82768 Canola mitochondrion 13.01 22.38
CDX86716 Canola cytosol, endoplasmic reticulum, peroxisome 13.58 22.12
CDX94504 Canola cytosol, endoplasmic reticulum, peroxisome 13.58 22.07
CDX97356 Canola cytosol, endoplasmic reticulum, golgi 13.3 21.91
CDY04398 Canola cytosol, endoplasmic reticulum, golgi 13.3 21.91
CDY02312 Canola mitochondrion 13.01 21.9
CDY09555 Canola mitochondrion 13.01 21.9
CDY63064 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.15 21.63
CDY67756 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.3 21.61
CDX95646 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.15 21.38
CDY49498 Canola golgi 12.45 21.36
CDY49015 Canola golgi 12.45 21.36
CDY52524 Canola golgi 12.73 21.23
CDY13102 Canola golgi 12.31 21.12
CDY29113 Canola golgi 12.31 21.12
CDY31644 Canola golgi 12.59 20.99
CDX77481 Canola endoplasmic reticulum 13.3 20.75
CDX85133 Canola endoplasmic reticulum 13.3 20.61
CDX92990 Canola endoplasmic reticulum 13.3 20.61
CDY53207 Canola endoplasmic reticulum 13.15 20.44
CDY70926 Canola cytosol, endoplasmic reticulum, golgi, plastid 12.31 20.28
CDY28188 Canola cytosol, endoplasmic reticulum, golgi, plastid 12.31 20.28
CDY39205 Canola cytosol, endoplasmic reticulum, golgi, plastid 12.16 20.0
CDX72242 Canola cytosol, endoplasmic reticulum, golgi, plastid 12.16 20.0
CDY18087 Canola cytosol, endoplasmic reticulum, golgi 12.87 19.78
CDY64583 Canola endoplasmic reticulum 12.87 19.78
CDY49495 Canola cytosol 2.26 16.33
CDY60264 Canola plastid 12.87 14.89
Protein Annotations
MapMan:3.13.6.1Gene3D:3.40.50.720Gene3D:3.90.25.10EnsemblPlants:CDX88455ProteinID:CDX88455ProteinID:CDX88455.1
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0006139GO:GO:0006810GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009506GO:GO:0009719GO:GO:0009987GO:GO:0010253
GO:GO:0010280GO:GO:0010315GO:GO:0030154GO:GO:0042127GO:GO:0050377GO:GO:0051555
EnsemblPlantsGene:GSBRNA2T00148001001InterPro:NAD(P)-bd_domInterPro:NAD(P)-bd_dom_sfPFAM:PF04321PFAM:PF16363PANTHER:PTHR43000
PANTHER:PTHR43000:SF8InterPro:RmlD-like-bdSUPFAM:SSF51735UniParc:UPI0004EE536FSEG:seg:
Description
BnaC06g38990D
Coordinates
chrLK031855:+:1102871..1106790
Molecular Weight (calculated)
79575.2 Da
IEP (calculated)
7.447
GRAVY (calculated)
-0.340
Length
707 amino acids
Sequence
(BLAST)
001: MSNYQTVLIW YNSSSSLSNE SCLWPLIVTK IPKILREMAS YTPKNILITG AAGFIASHVA NRLIRTYPHY KIVVLDKLDY CSNLKNLNPS KNSPSFKFVK
101: GDIASADLVN HLLITEGIDT IMHFAAQTHV DNSFGNSFEF TKNNIYGTHV LLEACKVTGQ VRRFIHVSTD EVYGETDEDA LVGNHEASQL LPTNPYSATK
201: AGAEMLVMAY GRSYGLPVIT TRGNNVYGPN QFPEKLIPKF ILLAMRGKVL PIHGDGSNVR SYLYCEDVAE AFEVILHKGE VGHVYNIGTK KERRVNDVAR
301: DVCKLFGMDP EASIKFVENR PFNDQRYFLD DEKLKKLGWS ERTTWEEGLK KTMEWYTQNP EWWGDVSGAL LPHPRMLMMP GGRHFDGSDE ISSAATASDK
401: PSQTHMVVPS TRSSTSAPQK PSLKFLIYGK TGWIGGLLGK LCEKQVIAYE YGKGRLEDRA SLLQDVVSVK PTHVFNSAGV TGRPNVDWCE SHKAETIRAN
501: VAGTLTLADV CREHGLLMMN FATGCIFEYD EKHPEGSGVG FKEEDTPNFT GSFYSKTKAM VEELLKEFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV
601: VNIPNSMTVL DELLPISIEM AKRNLKGIWN FTNPGVVSHN EILEMYRDYI NPDFKWANFT LEEQAKVIVA PRSNNEMDAS KLKKEFPELL SIKESLIKYA
701: FEPNKKT
Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)
001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT
Arabidopsis Description
RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.