Factsheet for TraesCS4D01G206000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G099200.1
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4B01G205100.3
TraesCS4D01G122000.1
TraesCS4D01G206000.1
TraesCS5A01G144000.1
TraesCS5B01G143100.1
TraesCS5D01G148000.1
TraesCS6A01G257500.1
TraesCS6B01G267600.1
TraesCS6D01G238800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	TraesCS6A01G257500.1	AT1G63000.1	21798944
AT1G78570.1	TraesCS6B01G267600.1	AT1G63000.1	21798944
AT1G78570.1	TraesCS6D01G238800.1	AT1G63000.1	21798944
AT1G78570.1	TraesCS4A01G099200.1	AT1G78570.1	21798944
AT1G78570.1	TraesCS4B01G205100.3	AT1G78570.1	21798944
AT1G78570.1	TraesCS4D01G206000.1	AT1G78570.1	21798944
AT1G78570.1	TraesCS4A01G191300.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS4B01G124000.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS4D01G122000.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS5A01G144000.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS5B01G143100.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS5D01G148000.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G099200.1	Wheat	cytosol	98.83	99.85
TraesCS4B01G205100.3	Wheat	mitochondrion	99.71	99.71
Os03t0278200-01	Rice	nucleus, plasma membrane	93.26	94.22
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	92.52	93.9
EER95086	Sorghum	cytosol, mitochondrion, plastid	91.64	93.01
HORVU4Hr1G059120.2	Barley	plastid	98.39	92.81
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	91.06	92.41
Zm00001d028654_P002	Maize	cytosol	90.47	91.82
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	83.14	84.75
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	82.11	84.21
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	82.7	84.18
CDX97601	Canola	cytosol, mitochondrion, plastid	79.62	84.06
CDX98494	Canola	cytosol, mitochondrion, plastid	79.47	83.9
CDY32340	Canola	cytosol, mitochondrion, peroxisome	78.89	83.67
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	81.82	83.66
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	77.86	83.49
AT3G14790.2	Thale cress	mitochondrion	81.52	83.36
CDY40003	Canola	cytosol, mitochondrion, plastid	81.82	83.28
CDY20084	Canola	cytosol, mitochondrion, peroxisome	78.59	83.23
CDY35137	Canola	cytosol, mitochondrion, plastid	81.52	82.99
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	78.3	82.92
CDY25850	Canola	cytosol, mitochondrion, peroxisome	51.91	82.71
CDY24092	Canola	cytosol, mitochondrion, peroxisome	80.65	82.71
CDY45116	Canola	cytosol, mitochondrion, peroxisome	80.65	82.71
CDY60210	Canola	cytosol, mitochondrion, peroxisome	80.94	82.63
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	81.38	82.59
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	80.79	82.48
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	80.35	82.41
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	80.5	82.31
CDX88455	Canola	cytosol, peroxisome, plastid	82.84	79.92
TraesCS6D01G238800.1	Wheat	peroxisome	34.6	78.67
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	75.51	78.39
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	73.61	76.76
Solyc08g069110.2.1	Tomato	unclear	73.17	76.65
TraesCS1D01G315500.1	Wheat	cytosol, mitochondrion, plastid	40.91	75.82
KRH16155	Soybean	cytosol	72.43	75.42
KRH04933	Soybean	cytosol, mitochondrion, plastid	71.11	75.31
TraesCS1D01G451900.1	Wheat	endoplasmic reticulum, golgi	12.46	24.01
TraesCS5D01G188200.1	Wheat	plastid	12.61	22.93
TraesCS5D01G321100.1	Wheat	cytosol	12.32	22.76
TraesCS5D01G298700.1	Wheat	mitochondrion	13.05	21.14
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	12.32	20.74
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	12.32	20.39
TraesCS7D01G154100.1	Wheat	golgi	12.76	20.09
TraesCS6D01G335600.1	Wheat	plastid	12.76	19.86
TraesCS5D01G288700.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	13.2	18.71
TraesCS7D01G257800.1	Wheat	plastid	13.34	18.57
TraesCS4D01G224000.1	Wheat	plastid	13.05	18.46

Protein Annotations

EnsemblPlants:TraesCS4D01G206000.1	EnsemblPlantsGene:TraesCS4D01G206000	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363	SUPFAM:SSF51735
TIGR:cd05246	TIGR:cd05254	MapMan:3.13.6.1	:	:	:

Description

No Description!

Coordinates

chr4D:-:353696822..353699179

Molecular Weight (calculated)

76703.7 Da

IEP (calculated)

6.943

GRAVY (calculated)

-0.323

Length

682 amino acids

Sequence
(BLAST)

001: MAMVSAKMAT YEPKNILITG AAGFIASHVA NRLIRSYPHY KIVVLDKIDY CSNLKNLNPS RPSPNFKFVK GDIASADLVN YLLITESIDT IMHFAAQTHV
101: DNSFGNSFEF TKNNIYGTHV LLEACKVTGQ IRRFIHVSTD EVYGETDEDA VVGNHEASQL LPTNPYSATK AGAEMLVMAY GRSYGLPVIT TRGNNVYGPN
201: QFPEKLIPKF ILLAMKGLPL PIHGDGSNVR SYLYCEDVAE AFEVVLHKGE VGHVYNIGTV KERRVIDVAS DICKLFGLDT EKVIRFVENR PFNDQRYFLD
301: DQKLKKLGWA ERTTWEEGLK KTIEWYTSNP DYWGDVAGAL LPHPRMLMTP GVERHNWTEE IKSLASSPAE AKECSTVPAA ATSKSTSSVP QKATYKFLIY
401: GKTGWIGGLL GKICEKQGIP YEYGKGRLQE RSQLLQDIRN VKPTHVFNAA GVTGRPNVDW CETHKQDTIR TNVVGTLNLA DVCREQGLLM INYATGCIFE
501: YNAEHPEGSG IGFKEEDTPN FIGSFYSKTK AMVEELLKDY DNVCTLRVRM PISSDLSNPR NFITKIARYD KVVNIPNSMT ILDELLPISV EMAKRDCRGI
601: WNFTNPGVVS HNEILEMYKE YINPDFKWTN FTLEEQAKVI VAPRSNNEMD ASKLKSEFPE LLSIKESLIK NVFEPNRKVS TN

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.