Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G191300.1 | Wheat | cytosol | 90.57 | 99.68 |
| TraesCS4B01G124000.1 | Wheat | plastid | 98.23 | 98.23 |
| Os11t0124300-01 | Rice | nucleus, plastid | 79.23 | 82.64 |
| Os12t0122000-01 | Rice | plastid | 79.97 | 82.27 |
| TraesCS5D01G148000.1 | Wheat | plastid | 78.2 | 81.32 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 62.89 | 81.02 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 36.38 | 78.16 |
| Zm00001d052380_P001 | Maize | plastid | 75.41 | 76.65 |
| OQU82754 | Sorghum | plastid | 78.35 | 74.82 |
| Zm00001d005029_P001 | Maize | plastid | 74.08 | 74.19 |
| GSMUA_Achr11P... | Banana | plastid | 54.2 | 64.11 |
| CDX78219 | Canola | nucleus, plastid | 52.58 | 59.2 |
| CDX73496 | Canola | nucleus, plastid | 53.46 | 58.36 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 56.26 | 56.85 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 53.46 | 55.59 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 56.41 | 54.17 |
| TraesCS2D01G208500.1 | Wheat | cytosol | 34.46 | 52.12 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 58.17 | 50.51 |
| Solyc10g074680.1.1 | Tomato | cytosol | 56.55 | 46.49 |
| PGSC0003DMT400043358 | Potato | cytosol | 56.26 | 46.25 |
| KRH40615 | Soybean | nucleus, plastid | 54.05 | 44.59 |
| KRH00551 | Soybean | nucleus, plastid | 54.34 | 43.82 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 25.48 | 35.45 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 22.24 | 33.19 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 19.29 | 33.16 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 19.88 | 31.76 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 13.7 | 29.62 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 13.55 | 29.3 |
| TraesCS4D01G338800.1 | Wheat | cytoskeleton, cytosol, peroxisome, plastid | 20.77 | 28.83 |
| TraesCS3D01G385500.1 | Wheat | cytosol | 21.5 | 28.13 |
| TraesCS3D01G220100.3 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 22.24 | 28.12 |
| TraesCS3D01G385400.1 | Wheat | cytosol | 21.21 | 27.85 |
| TraesCS1D01G421200.1 | Wheat | cytosol | 20.77 | 27.76 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 19.44 | 27.27 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 12.37 | 26.92 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 21.35 | 26.36 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 23.71 | 25.84 |
| TraesCS7D01G053600.1 | Wheat | plastid | 22.53 | 24.4 |
| TraesCS2D01G095300.1 | Wheat | nucleus | 25.63 | 24.34 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 16.64 | 23.79 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 19.44 | 23.61 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G122000.1 | EnsemblPlantsGene:TraesCS4D01G122000 | InterPro:IPR005202 | InterPro:TF_GRAS | ncoils:Coil | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF12 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | MapMan:26.3.1.5 |
Description
No Description!
Coordinates
chr4D:+:105135086..105137767
Molecular Weight (calculated)
72233.7 Da
IEP (calculated)
6.404
GRAVY (calculated)
-0.152
Length
679 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSLLLFP SSSSSAPNHS SYSHAHAAAS ASHSALLPPL PSPSPSDLFL YLDQLDHQEG GAAMVRKRPA PDVDLPPPRR HVTGDLSDVT AATGGAAPPQ
101: QLPSAVAGSA QLPALPMQLP AFGGHLQAPV PAMDVVVAPQ VATEVNVNNN STAWVDGIIR DIIGSSGAAV SVAQLIHNVR EIIHPCNPGL ASLLELRLRS
201: LLASDLVQHP PPPPPPPHHP PSLLPGAGGN TILSAPPVPA LPPPPPPDKR RREEEQQNPP PQSPKPPPSA EETAAAAAAA AAAASAALKE RKEEQRRRQR
301: DEEGLHLLTL LLQCAESVNS DDLDEAQRAL LEIAELATPF GTSTQRVAAY FAEAMSARLV SSCLGLYAPL PNASSPAASR LVNSRVAAAF QVFNGISPFV
401: KFSHFTANQA IQEAFEREDR VHIVDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM EALEATGKRL SDFAHTLGLP FEFYPVAGKA GNLDPEKLGV
501: DTRRREAVAV HWLHHSLYDV TGNDSNTLNL IQRLAPKVVT MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYSEDSSE RHVVEQQLLA REIRNVLAVG
601: GPARTGDIKF GNWREKLAQS GFRAASLAGS AAAQASLLLG MFPSDGYTLV EENGTLKLGW KDLCLLTASA WRPFQALGR
101: QLPSAVAGSA QLPALPMQLP AFGGHLQAPV PAMDVVVAPQ VATEVNVNNN STAWVDGIIR DIIGSSGAAV SVAQLIHNVR EIIHPCNPGL ASLLELRLRS
201: LLASDLVQHP PPPPPPPHHP PSLLPGAGGN TILSAPPVPA LPPPPPPDKR RREEEQQNPP PQSPKPPPSA EETAAAAAAA AAAASAALKE RKEEQRRRQR
301: DEEGLHLLTL LLQCAESVNS DDLDEAQRAL LEIAELATPF GTSTQRVAAY FAEAMSARLV SSCLGLYAPL PNASSPAASR LVNSRVAAAF QVFNGISPFV
401: KFSHFTANQA IQEAFEREDR VHIVDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM EALEATGKRL SDFAHTLGLP FEFYPVAGKA GNLDPEKLGV
501: DTRRREAVAV HWLHHSLYDV TGNDSNTLNL IQRLAPKVVT MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYSEDSSE RHVVEQQLLA REIRNVLAVG
601: GPARTGDIKF GNWREKLAQS GFRAASLAGS AAAQASLLLG MFPSDGYTLV EENGTLKLGW KDLCLLTASA WRPFQALGR
001: MEATQKHMIQ EGSSMFYHQP SSVKQMDLSV QTFDSYCTLE SSSGTKSHPC LNNKNNSSST TSFSSNESPI SQANNNNLSR FNNHSPEENN NSPLSGSSAT
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
101: NTNETELSLM LKDLETAMME PDVDNSYNNQ GGFGQQHGVV SSAMYRSMEM ISRGDLKGVL YECAKAVENY DLEMTDWLIS QLQQMVSVSG EPVQRLGAYM
201: LEGLVARLAS SGSSIYKALR CKDPTGPELL TYMHILYEAC PYFKFGYESA NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPNVRITGID
301: DPRSSFARQG GLELVGQRLG KLAEMCGVPF EFHGAALCCT EVEIEKLGVR NGEALAVNFP LVLHHMPDES VTVENHRDRL LRLVKHLSPN VVTLVEQEAN
401: TNTAPFLPRF VETMNHYLAV FESIDVKLAR DHKERINVEQ HCLAREVVNL IACEGVEREE RHEPLGKWRS RFHMAGFKPY PLSSYVNATI KGLLESYSEK
501: YTLEERDGAL YLGWKNQPLI TSCAWR
Arabidopsis Description
SCL5scarecrow-like 5 [Source:TAIR;Acc:AT1G50600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.