Factsheet for TraesCS3D01G482600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G406300.1
TraesCS1B01G436500.1
TraesCS1D01G414700.1
TraesCS3A01G240500.1
TraesCS3B01G268800.1
TraesCS3D01G240900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	TraesCS1A01G406300.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1B01G436500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1D01G414700.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3A01G240500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3B01G268800.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3D01G240900.1	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G106260.1	Barley	cytosol	39.12	99.44
TraesCS3A01G487500.1	Wheat	cytosol, plastid	96.04	97.76
TraesCS3B01G535100.1	Wheat	cytosol	96.92	97.35
Os01t0948200-00	Rice	cytosol	90.11	92.76
Zm00001d042127_P001	Maize	plastid	85.71	87.25
EES02045	Sorghum	cytosol, plastid	87.03	86.27
Zm00001d011881_P001	Maize	cytosol	83.3	84.41
GSMUA_Achr8P09690_001	Banana	cytosol	63.52	64.8
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	62.86	60.47
CDY68881	Canola	cytosol	30.99	57.79
CDY45059	Canola	cytosol	38.02	56.91
Bra018848.1-P	Field mustard	cytosol	51.87	53.64
Bra014251.1-P	Field mustard	cytosol	52.31	53.48
VIT_13s0019g01220.t01	Wine grape	cytosol	55.38	52.72
PGSC0003DMT400011839	Potato	cytosol	54.07	52.56
CDY22795	Canola	cytosol, plastid	51.21	52.48
Solyc12g099900.1.1	Tomato	nucleus	53.85	52.35
CDY03601	Canola	cytosol	51.43	52.12
VIT_06s0009g02390.t01	Wine grape	cytosol	53.85	51.69
PGSC0003DMT400058477	Potato	cytosol	52.97	51.06
Solyc01g008910.2.1	Tomato	cytosol	53.41	51.05
AT1G50420.1	Thale cress	cytosol	53.85	50.83
KRH29080	Soybean	cytosol	50.55	50.55
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	50.99	49.89
KRH24106	Soybean	cytosol, nucleus, peroxisome	49.89	49.89
KRH27822	Soybean	nucleus, plastid	50.55	48.63
TraesCS2D01G534700.1	Wheat	cytosol	32.53	47.13
TraesCS6D01G055100.1	Wheat	cytosol	30.99	44.9
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	29.89	43.59
KRH29971	Soybean	cytosol	41.98	43.21
KRH62871	Soybean	cytosol	41.98	43.12
TraesCS5D01G139500.1	Wheat	mitochondrion	44.62	36.31
TraesCS6D01G153000.1	Wheat	cytosol	28.35	32.66
TraesCS7D01G379200.1	Wheat	cytosol	29.45	31.53
TraesCS4D01G127800.2	Wheat	mitochondrion	32.75	31.37
TraesCS2D01G208500.1	Wheat	cytosol	29.01	29.4
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	30.99	28.83
TraesCS3D01G220100.3	Wheat	cytosol, endoplasmic reticulum, plasma membrane	33.19	28.12
TraesCS3D01G385500.1	Wheat	cytosol	31.87	27.94
TraesCS3D01G385400.1	Wheat	cytosol	31.21	27.47
TraesCS1D01G421200.1	Wheat	cytosol	29.89	26.77
TraesCS1D01G303500.1	Wheat	peroxisome	27.25	25.41
TraesCS4D01G040400.1	Wheat	cytosol	34.51	25.2
GSMUA_Achr11P...	Banana	cytosol	59.56	24.59
CDY37137	Canola	plastid	51.21	24.42
TraesCS4D01G054000.1	Wheat	cytosol	28.79	23.82
TraesCS5D01G148000.1	Wheat	plastid	32.97	22.97
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	24.4	22.93
TraesCS2D01G095300.1	Wheat	nucleus	35.38	22.52
TraesCS4D01G122000.1	Wheat	plastid	33.19	22.24
TraesCS7D01G053600.1	Wheat	plastid	28.57	20.73

Protein Annotations

EnsemblPlants:TraesCS3D01G482600.1	EnsemblPlantsGene:TraesCS3D01G482600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:IPR005202	InterPro:Scarecrow-like_3	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13	PFAM:PF03514
PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:	:

Description

No Description!

Coordinates

chr3D:+:580088449..580089816

Molecular Weight (calculated)

49340.9 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.120

Length

455 amino acids

Sequence
(BLAST)

001: MVHQDEGSSS SVTSSPLHNF SNMPLHPHPG ANGAGAGATP PWMLRELRSD ERGLCLIHLL LNCAAAASAG RLDAANAALE HIATLAAPDG DAMQRVAAAF
101: AEALARRALR AWPGLCRALL LPRAGPTPAE VAVARRHFLD LCPFLRLAGA AANQAILEAM ESEKIVHVID LGGADATQWL ELLHLLAARP EGPPHFRLTA
201: VHEHKDLLSQ TAMALTKEAE RLDVPFQFNP VVSRLDALDV ESLRVKTGEA LAISSSLQLH RLLATDDDSI PAAAAAADKD RRRKSSPDSS GLLSPSTSRA
301: DAFLGALWGL SPKVMVVAEQ EASHNTPGLT ERFVEALNYY AALFDCLEVG AARGSVERAR VERWLLGEEI KNIVACDGAE RRERHERLDR WAARMEGAGF
401: GRVPLSYYAL LQARRAAQGL GCDGFKVREE KGTFFLCWQD RALFSVSAWR GRRFD

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.