Factsheet for Bra014251.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013601.1-P
Bra020855.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Bra013601.1-P	AT4G22220.1	21798944
AT1G50420.1	Bra020855.1-P	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45059	Canola	cytosol	68.31	100.0
Bra018848.1-P	Field mustard	cytosol	90.34	91.36
AT1G50420.1	Thale cress	cytosol	92.81	85.68
VIT_06s0009g02390.t01	Wine grape	cytosol	71.46	67.09
PGSC0003DMT400011839	Potato	cytosol	70.11	66.67
Solyc12g099900.1.1	Tomato	nucleus	69.89	66.45
PGSC0003DMT400058477	Potato	cytosol	67.42	63.56
KRH29080	Soybean	cytosol	64.72	63.3
Solyc01g008910.2.1	Tomato	cytosol	66.29	61.97
KRH24106	Soybean	cytosol, nucleus, peroxisome	63.15	61.76
HORVU3Hr1G106260.1	Barley	cytosol	24.49	60.89
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	63.6	60.86
KRH27822	Soybean	nucleus, plastid	63.37	59.62
GSMUA_Achr8P09690_001	Banana	cytosol	59.55	59.42
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	59.1	55.6
Os01t0948200-00	Rice	cytosol	53.93	54.3
TraesCS3A01G487500.1	Wheat	cytosol, plastid	53.48	53.24
TraesCS3B01G535100.1	Wheat	cytosol	53.71	52.76
Zm00001d042127_P001	Maize	plastid	52.58	52.35
TraesCS3D01G482600.1	Wheat	cytosol	53.48	52.31
Zm00001d011881_P001	Maize	cytosol	51.46	51.0
EES02045	Sorghum	cytosol, plastid	52.58	50.98
Os06t0211500-00	Rice	cytosol	19.33	45.03
Os12t0138100-00	Rice	cytosol	42.7	38.62
Os11t0141500-00	Rice	cytosol	42.47	38.41
HORVU2Hr1G113490.1	Barley	cytosol	27.19	38.41
HORVU2Hr1G113480.1	Barley	cytosol	27.19	38.41
Zm00001d023248_P001	Maize	cytosol	42.92	37.75
TraesCS2D01G534700.1	Wheat	cytosol	26.07	36.94
TraesCS6D01G055100.1	Wheat	cytosol	25.84	36.62
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	25.39	36.22
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	11.69	35.62
Bra012102.1-P	Field mustard	cytosol	13.26	35.12
HORVU5Hr1G043310.1	Barley	cytosol	43.37	35.09
TraesCS5B01G133800.1	Wheat	mitochondrion	43.37	34.96
TraesCS5D01G139500.1	Wheat	mitochondrion	43.6	34.7
TraesCS2A01G532900.1	Wheat	cytosol	33.48	34.65
TraesCS5A01G135000.1	Wheat	mitochondrion	43.15	34.59
EES16518	Sorghum	cytosol	34.83	34.44
Bra007056.1-P	Field mustard	mitochondrion, plastid	23.37	32.91
KXG22822	Sorghum	mitochondrion	42.25	32.58
EES09233	Sorghum	cytosol	34.38	31.42
HORVU4Hr1G026010.3	Barley	cytosol	31.24	31.17
HORVU2Hr1G113360.1	Barley	cytosol	33.26	31.16
Os12t0138200-00	Rice	cytosol	35.28	30.78
TraesCS4A01G185900.1	Wheat	cytosol	30.79	30.72
Os11t0141700-00	Rice	cytosol	34.83	30.63
TraesCS2B01G562400.1	Wheat	cytosol	32.58	30.59
OQU77884	Sorghum	plasma membrane	31.24	30.55
Bra039762.1-P	Field mustard	cytosol	33.48	30.53
Zm00001d052463_P001	Maize	cytosol	34.83	29.64
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	30.56	29.44
Bra025456.1-P	Field mustard	mitochondrion	16.18	29.27
TraesCS4D01G127800.2	Wheat	mitochondrion	31.24	29.26
TraesCSU01G014000.1	Wheat	cytosol	19.33	29.25
Bra038002.1-P	Field mustard	nucleus, plastid	27.87	27.99
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	30.34	27.72
OQU77885	Sorghum	cytosol	29.89	27.59
Bra013973.1-P	Field mustard	cytosol	31.24	26.48
Zm00001d023247_P001	Maize	plastid	32.81	26.07
Bra024875.1-P	Field mustard	nucleus	33.03	25.65
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	27.19	23.96
Os05t0378200-00	Rice	cytosol	29.66	23.96
GSMUA_Achr11P...	Banana	cytosol	59.1	23.87
Bra017443.1-P	Field mustard	cytosol	28.99	23.58
Bra026999.1-P	Field mustard	nucleus, plastid	30.11	22.22
Os05t0378500-00	Rice	plastid	26.97	21.43
Bra027620.1-P	Field mustard	plastid	29.89	21.04
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	2.47	3.12
Os11t0141550-01	Rice	cytosol	0.22	0.78

Protein Annotations

MapMan:15.5.12	EnsemblPlantsGene:Bra014251	EnsemblPlants:Bra014251.1	EnsemblPlants:Bra014251.1-P	GO:GO:0000989	GO:GO:0003674
GO:GO:0003712	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005202	UniProt:M4DCN5	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13
InterPro:Scarecrow-like_3	InterPro:TF_GRAS	UniParc:UPI0002545FB6	SEG:seg	:	:

Description

AT1G50420 (E=3e-127) SCL3, SCL-3 | SCL3; transcription factor

Coordinates

chrA08:+:2191455..2192792

Molecular Weight (calculated)

49743.6 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.203

Length

445 amino acids

Sequence
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLTRP TLLPSPSSSP FHSLKDLKPE ERGLYLIHLL LTCANHVASG SLQNANAALE QLSLLSSPDG DTMQRVAAYF
101: TEALANRILK SWPGLYKALN ATQTRTSNVS EEVHVRRLFF DMFPILKVSY LLTNRAILEA MEGEKMVHVI DLDASEPAQW LALIQAFNSR PEGPPHLRIT
201: GVHHQKEVLD QMAHRLIEEA EKLDIPFQFN PVVSSLQCLN VEQLRVKTGE ALAVSSVLQL HNLLASDVTS NNGHSLSGDS ASSLPLSNSG KIDSFLNAIW
301: GLSPKIMVVT EQDSDHNGST VMERLLESLY TYAALFDCLE TKVPRTSQDR MKVEKMLFGE EIKNIIACEG SERRERHEKL EKWSQRIDLA GFGNVPLSYY
401: AMLQARRLLQ GYGFDGYRIK EESGCAVICW QDRPLYSVSA WRCRK

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.