Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G534700.1 | Wheat | cytosol | 60.55 | 91.4 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 82.91 | 91.4 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 77.64 | 77.47 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 38.4 | 40.18 |
| OQU77884 | Sorghum | plasma membrane | 37.76 | 39.34 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 37.76 | 38.74 |
| CDY45059 | Canola | cytosol | 24.26 | 37.83 |
| CDY68881 | Canola | cytosol | 19.41 | 37.7 |
| OQU77885 | Sorghum | cytosol | 37.76 | 37.14 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 33.97 | 36.1 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 33.76 | 33.83 |
| Bra014251.1-P | Field mustard | cytosol | 30.59 | 32.58 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 32.7 | 32.43 |
| Solyc12g099900.1.1 | Tomato | nucleus | 31.86 | 32.27 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 30.8 | 32.09 |
| PGSC0003DMT400011839 | Potato | cytosol | 31.65 | 32.05 |
| Bra018848.1-P | Field mustard | cytosol | 29.75 | 32.05 |
| CDY22795 | Canola | cytosol, plastid | 29.96 | 31.98 |
| CDY03601 | Canola | cytosol | 30.17 | 31.85 |
| KRH29080 | Soybean | cytosol | 30.38 | 31.65 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 31.43 | 31.43 |
| PGSC0003DMT400058477 | Potato | cytosol | 31.01 | 31.14 |
| Solyc01g008910.2.1 | Tomato | cytosol | 31.01 | 30.88 |
| KRH29971 | Soybean | cytosol | 28.48 | 30.54 |
| Os05t0378200-00 | Rice | cytosol | 35.44 | 30.49 |
| AT1G50420.1 | Thale cress | cytosol | 30.8 | 30.29 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 9.28 | 30.14 |
| KRH62871 | Soybean | cytosol | 27.85 | 29.8 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 33.54 | 28.8 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 28.06 | 28.6 |
| KRH27822 | Soybean | nucleus, plastid | 27.22 | 27.27 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 21.94 | 26.33 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 24.47 | 25.16 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 22.78 | 24.05 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 21.73 | 24.01 |
| TraesCS3B01G262400.1 | Wheat | mitochondrion, plastid | 25.95 | 23.25 |
| TraesCS4B01G342800.1 | Wheat | cytosol | 21.52 | 23.18 |
| TraesCS3B01G424500.1 | Wheat | cytosol | 24.89 | 22.82 |
| TraesCS3B01G424600.1 | Wheat | cytosol | 24.89 | 22.74 |
| TraesCS1B01G443800.1 | Wheat | cytosol | 22.57 | 20.7 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 20.46 | 19.96 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 22.78 | 19.74 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 25.11 | 19.16 |
| TraesCS2B01G112100.1 | Wheat | nucleus | 28.69 | 19.02 |
| TraesCS5B01G143100.1 | Wheat | plastid | 23.84 | 17.71 |
| TraesCS4B01G124000.1 | Wheat | plastid | 25.11 | 17.53 |
| CDY37137 | Canola | plastid | 29.96 | 14.88 |
| GSMUA_Achr11P... | Banana | cytosol | 33.12 | 14.25 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G562400.1 | EnsemblPlantsGene:TraesCS2B01G562400 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF123 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr2B:+:754782577..754784001
Molecular Weight (calculated)
52316.6 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.123
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPDNRGQEP TRPVYAPVPR RTALSVDFGN GVNGAFVRSN IDGTMTFLLP DVRSAAAPTR PTAPQNENHD EERAIHLFKL LYSCAAALDK GEKELVNKGL
101: ELICSLATDD GEPVHRLVAS FADALALRLV QPWQGVCRAL QLPTTTPAPE ATAARRHFAV MCPFLRLAET AANYAIIDAV QTERNAVLHV VDLGGSDPGQ
201: WLLLLRFFAN RPGASTHHQI LRLTIVNEED EFLSSTAALL ALEAEQLHIS FQFHPVRLHI NQLLSIEPLD VRSGEALVIV STLQLHRLLA NEFAEAVTRP
301: HDRKGKGQAH ATMTRADALL RKLAELSPKL MVVTEQEASH NSVEFTDRFG NALKYYGALF DALEESVPAR GSALERADVE RCLLLPQIRD IIACDGAQRR
401: ERHERMVDWA ARMEAAGFVP ATMSPGTVAQ TAILAHMLAG DSRAYRVCSQ NDGRCIFIYR DDVPMFSVST WRTV
101: ELICSLATDD GEPVHRLVAS FADALALRLV QPWQGVCRAL QLPTTTPAPE ATAARRHFAV MCPFLRLAET AANYAIIDAV QTERNAVLHV VDLGGSDPGQ
201: WLLLLRFFAN RPGASTHHQI LRLTIVNEED EFLSSTAALL ALEAEQLHIS FQFHPVRLHI NQLLSIEPLD VRSGEALVIV STLQLHRLLA NEFAEAVTRP
301: HDRKGKGQAH ATMTRADALL RKLAELSPKL MVVTEQEASH NSVEFTDRFG NALKYYGALF DALEESVPAR GSALERADVE RCLLLPQIRD IIACDGAQRR
401: ERHERMVDWA ARMEAAGFVP ATMSPGTVAQ TAILAHMLAG DSRAYRVCSQ NDGRCIFIYR DDVPMFSVST WRTV
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.