Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G271000.1 | Wheat | cytosol | 98.55 | 98.71 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 98.23 | 97.91 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 95.81 | 96.28 |
| Os03t0707600-01 | Rice | nucleus | 86.96 | 86.4 |
| Zm00001d033680_P001 | Maize | nucleus | 86.96 | 85.71 |
| EER93592 | Sorghum | cytosol | 85.67 | 84.85 |
| Zm00001d013465_P001 | Maize | cytosol | 84.38 | 83.84 |
| GSMUA_Achr10P... | Banana | cytosol | 56.36 | 73.22 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 53.46 | 69.31 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 52.5 | 63.06 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 52.33 | 62.98 |
| KRH58636 | Soybean | nucleus | 52.66 | 62.52 |
| AT1G14920.1 | Thale cress | nucleus | 51.69 | 60.23 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 52.5 | 58.63 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 54.43 | 57.29 |
| Bra024875.1-P | Field mustard | nucleus | 52.01 | 56.37 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 51.85 | 56.29 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 52.01 | 55.03 |
| CDY04092 | Canola | cytosol | 46.7 | 54.31 |
| CDY64837 | Canola | cytosol | 47.02 | 53.87 |
| Bra017443.1-P | Field mustard | cytosol | 46.86 | 53.2 |
| TraesCS3B01G262400.1 | Wheat | mitochondrion, plastid | 34.94 | 41.02 |
| TraesCS4B01G342800.1 | Wheat | cytosol | 26.57 | 37.5 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 8.37 | 35.62 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 25.12 | 34.44 |
| TraesCS1B01G443800.1 | Wheat | cytosol | 26.41 | 31.72 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 19.0 | 29.87 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 21.58 | 29.84 |
| TraesCS3B01G424500.1 | Wheat | cytosol | 24.8 | 29.79 |
| TraesCS3B01G424600.1 | Wheat | cytosol | 24.8 | 29.67 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 20.13 | 29.14 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 20.45 | 27.55 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 23.99 | 27.24 |
| TraesCS2B01G112100.1 | Wheat | nucleus | 29.79 | 25.87 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 19.16 | 25.11 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 22.06 | 24.82 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 19.32 | 24.69 |
| TraesCS5B01G143100.1 | Wheat | plastid | 25.12 | 24.45 |
| TraesCS4B01G124000.1 | Wheat | plastid | 25.93 | 23.71 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G043100.1 | EnsemblPlantsGene:TraesCS4B01G043100 | Gene3D:1.10.10.1290 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:DELLA_N_sf | InterPro:IPR005202 | InterPro:IPR038088 | InterPro:TF_DELLA | InterPro:TF_DELLA_N |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | PFAM:PF03514 | PFAM:PF12041 | PFscan:PS50985 |
| SEG:seg | SMART:SM01129 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | : |
Description
No Description!
Coordinates
chr4B:+:30861382..30863247
Molecular Weight (calculated)
65173.8 Da
IEP (calculated)
4.749
GRAVY (calculated)
-0.107
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREYQDAGG SGGGGGGMGS SEDKMMVSGS AAAGEGEEVD ELLAALGYKV RASDMADVAQ KLEQLEMAMG MGGVGAGAAP DDSFATHLAT DTVHYNPTDL
101: SSWVESMLSE LNAPPPPLPP APQLNASTSS TVTGGGYFDL PPSVDSSCST YALRPIPSPA VAPADLSADS VVRDPKRMRT GGSSTSSSSS SSSLGGGGAR
201: SSVVEAAPPV AAAAGAPALP VVVVDTQEAG IRLVHALLAC AEAVQQENFS AAEALVKQIP LLAASQGGAM RKVAAYFGEA LARRVFRFRP QPDSSLLDAA
301: FADLLHAHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVV DFGIKQGMQW PALLQALALR PGGPPSFRLT GVGPPQPDET DALQQVGWKL AQFAHTIRVD
401: FQYRGLVAAT LADLEPFMLQ PEGEEDPNEE PEVIAVNSVF EMHRLLAQPG ALEKVLGTVR AVRPRIVTVV EQEANHNSGT FLDRFTESLH YYSTMFDSLE
501: GGSSGGPSEV SSGAAAAPAA AGTDQVMSEV YLGRQICNVV ACEGAERTER HETLGQWRNR LGNAGFETVH LGSNAYKQAS TLLALFAGGD GYKVEEKEGC
601: LTLGWHTRPL IATSAWRLAA P
101: SSWVESMLSE LNAPPPPLPP APQLNASTSS TVTGGGYFDL PPSVDSSCST YALRPIPSPA VAPADLSADS VVRDPKRMRT GGSSTSSSSS SSSLGGGGAR
201: SSVVEAAPPV AAAAGAPALP VVVVDTQEAG IRLVHALLAC AEAVQQENFS AAEALVKQIP LLAASQGGAM RKVAAYFGEA LARRVFRFRP QPDSSLLDAA
301: FADLLHAHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVV DFGIKQGMQW PALLQALALR PGGPPSFRLT GVGPPQPDET DALQQVGWKL AQFAHTIRVD
401: FQYRGLVAAT LADLEPFMLQ PEGEEDPNEE PEVIAVNSVF EMHRLLAQPG ALEKVLGTVR AVRPRIVTVV EQEANHNSGT FLDRFTESLH YYSTMFDSLE
501: GGSSGGPSEV SSGAAAAPAA AGTDQVMSEV YLGRQICNVV ACEGAERTER HETLGQWRNR LGNAGFETVH LGSNAYKQAS TLLALFAGGD GYKVEEKEGC
601: LTLGWHTRPL IATSAWRLAA P
001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
Arabidopsis Description
RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.