Factsheet for Zm00001d013465_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001952_P001
Zm00001d004894_P001
Zm00001d005657_P002
Zm00001d006028_P001
Zm00001d006398_P001
Zm00001d006421_P002
Zm00001d010308_P001
Zm00001d012465_P001
Zm00001d012810_P003
Zm00001d013571_P001
Zm00001d014698_P001
Zm00001d015233_P001
Zm00001d015410_P002
Zm00001d016973_P001
Zm00001d018076_P001
Zm00001d020264_P001
Zm00001d020941_P001
Zm00001d021515_P001
Zm00001d021536_P003
Zm00001d026536_P002
Zm00001d031451_P001
Zm00001d032292_P001
Zm00001d033419_P001
Zm00001d038165_P003
Zm00001d042998_P001
Zm00001d044849_P001
Zm00001d050285_P001
Zm00001d050903_P001
Zm00001d052234_P001
Zm00001d052595_P001
Zm00001d052890_P001
Zm00001d053775_P001
Zm00001d053890_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14920.1	Zm00001d005657_P002	AT1G22160.1	21798944
AT1G14920.1	Zm00001d018076_P001	AT1G22160.1	21798944
AT1G14920.1	Zm00001d020264_P001	AT1G22160.1	21798944
AT1G14920.1	Zm00001d032292_P001	AT1G22160.1	21798944
AT1G14920.1	Zm00001d044849_P001	AT1G22160.1	21798944
AT1G14920.1	Zm00001d050285_P001	AT1G22160.1	21798944
AT1G14920.1	Zm00001d052234_P001	AT1G22160.1	21798944
AT1G14920.1	Zm00001d013571_P001	AT1G79110.1	23482857
AT1G14920.1	Zm00001d033419_P001	AT1G79110.1	23482857
AT1G14920.1	Zm00001d012810_P003	AT2G36990.1	21798944
AT1G14920.1	Zm00001d010308_P001	AT3G05120.1	16709201
AT1G14920.1	Zm00001d038165_P003	AT3G05120.1	16709201
AT1G14920.1	Zm00001d010308_P001	AT3G05120.1	17194763
AT1G14920.1	Zm00001d038165_P003	AT3G05120.1	17194763
AT1G14920.1	Zm00001d010308_P001	AT3G05120.1	17416730
AT1G14920.1	Zm00001d038165_P003	AT3G05120.1	17416730
AT1G14920.1	Zm00001d010308_P001	AT3G05120.1	18827182
AT1G14920.1	Zm00001d038165_P003	AT3G05120.1	18827182
AT1G14920.1	Zm00001d010308_P001	AT3G05120.1	19500306
AT1G14920.1	Zm00001d038165_P003	AT3G05120.1	19500306
AT1G14920.1	Zm00001d013571_P001	AT3G12920.1	23482857
AT1G14920.1	Zm00001d033419_P001	AT3G12920.1	23482857
AT1G14920.1	Zm00001d006398_P001	AT3G16250.1	21798944
AT1G14920.1	Zm00001d021515_P001	AT3G16250.1	21798944
AT1G14920.1	Zm00001d001952_P001	AT3G51180.1	21798944
AT1G14920.1	Zm00001d026536_P002	AT3G51180.1	21798944
AT1G14920.1	Zm00001d010308_P001	AT3G63010.1	16709201
AT1G14920.1	Zm00001d038165_P003	AT3G63010.1	16709201
AT1G14920.1	Zm00001d010308_P001	AT3G63010.1	17194763
AT1G14920.1	Zm00001d038165_P003	AT3G63010.1	17194763
AT1G14920.1	Zm00001d010308_P001	AT3G63010.1	18827182
AT1G14920.1	Zm00001d038165_P003	AT3G63010.1	18827182
AT1G14920.1	Zm00001d010308_P001	AT3G63010.1	19500306
AT1G14920.1	Zm00001d038165_P003	AT3G63010.1	19500306
AT1G14920.1	Zm00001d013571_P001	AT4G19700.1	23482857
AT1G14920.1	Zm00001d033419_P001	AT4G19700.1	23482857
AT1G14920.1	Zm00001d006421_P002	AT4G20150.1	21798944
AT1G14920.1	Zm00001d021536_P003	AT4G20150.1	21798944
AT1G14920.1	Zm00001d016973_P001	AT4G24210.1	15155881
AT1G14920.1	Zm00001d050903_P001	AT4G24210.1	15155881
AT1G14920.1	Zm00001d016973_P001	AT4G24210.1	15161962
AT1G14920.1	Zm00001d050903_P001	AT4G24210.1	15161962
AT1G14920.1	Zm00001d016973_P001	AT4G24210.1	17194763
AT1G14920.1	Zm00001d050903_P001	AT4G24210.1	17194763
AT1G14920.1	Zm00001d010308_P001	AT5G27320.1	16709201
AT1G14920.1	Zm00001d038165_P003	AT5G27320.1	16709201
AT1G14920.1	Zm00001d010308_P001	AT5G27320.1	17194763
AT1G14920.1	Zm00001d038165_P003	AT5G27320.1	17194763
AT1G14920.1	Zm00001d010308_P001	AT5G27320.1	18827182
AT1G14920.1	Zm00001d038165_P003	AT5G27320.1	18827182
AT1G14920.1	Zm00001d010308_P001	AT5G27320.1	19500306
AT1G14920.1	Zm00001d038165_P003	AT5G27320.1	19500306
AT1G14920.1	Zm00001d004894_P001	AT5G38420.1	21798944
AT1G14920.1	Zm00001d052595_P001	AT5G38420.1	21798944
AT1G14920.1	Zm00001d013571_P001	AT5G45100.1	23482857
AT1G14920.1	Zm00001d033419_P001	AT5G45100.1	23482857
AT2G01570.1	Zm00001d014698_P001	AT1G27370.1	22942378
AT2G01570.1	Zm00001d015233_P001	AT1G27370.1	22942378
AT2G01570.1	Zm00001d015410_P002	AT1G27370.1	22942378
AT2G01570.1	Zm00001d053775_P001	AT1G27370.1	22942378
AT2G01570.1	Zm00001d053890_P003	AT1G27370.1	22942378
AT2G01570.1	Zm00001d013571_P001	AT1G79110.1	23482857
AT2G01570.1	Zm00001d033419_P001	AT1G79110.1	23482857
AT2G01570.1	Zm00001d006028_P001	AT2G42200.1	22942378
AT2G01570.1	Zm00001d020941_P001	AT2G42200.1	22942378
AT2G01570.1	Zm00001d031451_P001	AT2G42200.1	22942378
AT2G01570.1	Zm00001d052890_P001	AT2G42200.1	22942378
AT2G01570.1	Zm00001d010308_P001	AT3G05120.1	16709201
AT2G01570.1	Zm00001d038165_P003	AT3G05120.1	16709201
AT2G01570.1	Zm00001d010308_P001	AT3G05120.1	17194763
AT2G01570.1	Zm00001d038165_P003	AT3G05120.1	17194763
AT2G01570.1	Zm00001d010308_P001	AT3G05120.1	17416730
AT2G01570.1	Zm00001d038165_P003	AT3G05120.1	17416730
AT2G01570.1	Zm00001d010308_P001	AT3G05120.1	19500306
AT2G01570.1	Zm00001d038165_P003	AT3G05120.1	19500306
AT2G01570.1	Zm00001d013571_P001	AT3G12920.1	23482857
AT2G01570.1	Zm00001d033419_P001	AT3G12920.1	23482857
AT2G01570.1	Zm00001d006398_P001	AT3G16250.1	21798944
AT2G01570.1	Zm00001d021515_P001	AT3G16250.1	21798944
AT2G01570.1	Zm00001d010308_P001	AT3G63010.1	16709201
AT2G01570.1	Zm00001d038165_P003	AT3G63010.1	16709201
AT2G01570.1	Zm00001d010308_P001	AT3G63010.1	17194763
AT2G01570.1	Zm00001d038165_P003	AT3G63010.1	17194763
AT2G01570.1	Zm00001d010308_P001	AT3G63010.1	18827182
AT2G01570.1	Zm00001d038165_P003	AT3G63010.1	18827182
AT2G01570.1	Zm00001d010308_P001	AT3G63010.1	19429606
AT2G01570.1	Zm00001d038165_P003	AT3G63010.1	19429606
AT2G01570.1	Zm00001d010308_P001	AT3G63010.1	19500306
AT2G01570.1	Zm00001d038165_P003	AT3G63010.1	19500306
AT2G01570.1	Zm00001d012465_P001	AT4G04770.1	21798944
AT2G01570.1	Zm00001d042998_P001	AT4G04770.1	21798944
AT2G01570.1	Zm00001d013571_P001	AT4G19700.1	23482857
AT2G01570.1	Zm00001d033419_P001	AT4G19700.1	23482857
AT2G01570.1	Zm00001d016973_P001	AT4G24210.1	15155881
AT2G01570.1	Zm00001d050903_P001	AT4G24210.1	15155881
AT2G01570.1	Zm00001d016973_P001	AT4G24210.1	15161962
AT2G01570.1	Zm00001d050903_P001	AT4G24210.1	15161962
AT2G01570.1	Zm00001d010308_P001	AT5G27320.1	16709201
AT2G01570.1	Zm00001d038165_P003	AT5G27320.1	16709201
AT2G01570.1	Zm00001d010308_P001	AT5G27320.1	17194763
AT2G01570.1	Zm00001d038165_P003	AT5G27320.1	17194763
AT2G01570.1	Zm00001d010308_P001	AT5G27320.1	19500306
AT2G01570.1	Zm00001d038165_P003	AT5G27320.1	19500306
AT2G01570.1	Zm00001d013571_P001	AT5G45100.1	23482857
AT2G01570.1	Zm00001d033419_P001	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033680_P001	Maize	nucleus	94.24	93.49
Os03t0707600-01	Rice	nucleus	85.92	85.92
TraesCS4A01G271000.1	Wheat	cytosol	83.84	84.52
TraesCS4B01G043100.1	Wheat	cytosol	83.84	84.38
HORVU4Hr1G006930.1	Barley	nucleus	83.36	84.3
TraesCS4D01G040400.1	Wheat	cytosol	84.0	84.27
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	40.64	77.91
GSMUA_Achr10P...	Banana	cytosol	55.84	73.01
GSMUA_Achr8P18250_001	Banana	cytosol	53.92	70.35
KRH42544	Soybean	cytosol, nucleus, plastid	51.68	62.48
GSMUA_Achr1P21300_001	Banana	nucleus	51.36	62.21
KRH58636	Soybean	nucleus	51.84	61.95
AT1G14920.1	Thale cress	nucleus	51.36	60.23
CDY36236	Canola	cytosol, nucleus, plastid	52.48	58.99
VIT_01s0011g05260.t01	Wine grape	cytosol	53.76	56.95
Bra024875.1-P	Field mustard	nucleus	52.16	56.89
CDY17662	Canola	cytosol, nucleus, plastid	52.0	56.82
AT2G01570.1	Thale cress	mitochondrion, nucleus	52.0	55.37
CDY04092	Canola	cytosol	46.72	54.68
CDY64837	Canola	cytosol	47.04	54.24
Bra017443.1-P	Field mustard	cytosol	46.72	53.38
Zm00001d044065_P001	Maize	cytosol	33.12	43.58
Zm00001d042127_P001	Maize	plastid	24.96	34.9
Zm00001d011881_P001	Maize	cytosol	23.68	32.96
Zm00001d009646_P001	Maize	plastid	24.48	32.21
Zm00001d021826_P001	Maize	cytosol	22.24	30.75
Zm00001d023248_P001	Maize	cytosol	22.88	28.26
Zm00001d042472_P001	Maize	cytosol	24.16	28.07
Zm00001d046783_P001	Maize	mitochondrion	20.16	27.63
Zm00001d015815_P001	Maize	cytosol	18.24	27.4
Zm00001d033834_P001	Maize	cytosol, plastid	23.52	26.68
Zm00001d013385_P001	Maize	cytosol, plastid	23.68	26.01
Zm00001d038518_P001	Maize	cytosol	20.48	25.75
Zm00001d025133_P001	Maize	cytosol	19.84	25.1
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	20.0	25.1
Zm00001d049249_P001	Maize	plastid	29.92	24.13
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	17.76	24.03
Zm00001d052380_P001	Maize	plastid	25.6	23.95
Zm00001d045507_P001	Maize	plastid	23.52	23.86
Zm00001d005029_P001	Maize	plastid	25.76	23.75
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	18.24	23.41
Zm00001d052463_P001	Maize	cytosol	19.2	22.94
Zm00001d023247_P001	Maize	plastid	17.12	19.11

Protein Annotations

Gene3D:1.10.10.1290	EntrezGene:100127531	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	ProteinID:AQK63574.1
InterPro:DELLA_N_sf	EMBL:DQ903073	GO:GO:0000989	GO:GO:0003674	GO:GO:0003712	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:IPR038088
PFAM:PF03514	PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	UniProt:Q06F07
SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS	UniParc:UPI0000E27903	EnsemblPlantsGene:Zm00001d013465
EnsemblPlants:Zm00001d013465_P001	EnsemblPlants:Zm00001d013465_T001	SEG:seg	:	:	:

Description

dwarf plant9Dwarf plant9

Coordinates

chr5:-:12228329..12230206

Molecular Weight (calculated)

65746.2 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.204

Length

625 amino acids

Sequence
(BLAST)

001: MKREYQNAGG NDGYRGSSKD KSMAAAAGAG EQEEEVDELL AALGYKVRSS DMADVAQKLE QLEMAMGMGG ACPTADDGFV SHLATDTVHY NPSDLSSWVE
101: SMLSELNAPP PPLPPATPAP RLASTSSTVT SGAAAGAGYF DLPPAVDSSS STYALKPIPS PVAAASADPS PDSAREPKRM RTGGGSTSSS SSSSSSMDGG
201: RTRSSVVEAA PPATQAANGP AVPVVVVDTQ EAGIRLVHAL LACAEAVQQE NFSAADALVK QIPVLASSQG GAMRKVAAYF GEALARRVYR LRPAPDGSLL
301: DAAFADLLHA HFYESCPYLK FAHFTANQAI LEAFAGCRRV HVVDFGIKQG MQWPALLQAL ALRPGGPPSF RLTGVGPPQP DETDALQQVG WKLAQFAHTI
401: RVDFQYRGLV AATLADLEPF MLRPEGGGDT DDEPEVIAVN SVCELHRLLA QPGTLDKVLG TVRAVRPRIV TVVEQEANHN SGTFLDRFTE SLHYYSTMFD
501: SLEGAGSGSG SGSGSGQPTD ASPPAGTDQV MSEVYLGRQI CNIVACEGAE RTERHETLVQ WRGRLGGSGF EPVHLGSNAY KQASTLLALF AGGDGYRVEE
601: KDGCLTLGWH TRPLIATSAW RVAAP

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.