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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66770.1 Zm00001d005003_P002 AT2G41090.1 17360592
AT5G66770.1 Zm00001d008278_P001 AT2G41090.1 17360592
AT5G66770.1 Zm00001d010649_P001 AT2G41090.1 17360592
AT5G66770.1 Zm00001d028948_P001 AT2G41090.1 17360592
AT5G66770.1 Zm00001d038543_P004 AT2G41090.1 17360592
AT5G66770.1 Zm00001d038545_P001 AT2G41090.1 17360592
AT5G66770.1 Zm00001d041430_P001 AT2G41090.1 17360592
AT5G66770.1 Zm00001d043144_P001 AT2G41090.1 17360592
AT5G66770.1 Zm00001d047597_P001 AT2G41090.1 17360592
AT5G66770.1 Zm00001d052415_P001 AT2G41090.1 17360592
AT5G66770.1 Zm00001d005003_P002 AT5G21274.1 17360592
AT5G66770.1 Zm00001d008278_P001 AT5G21274.1 17360592
AT5G66770.1 Zm00001d010649_P001 AT5G21274.1 17360592
AT5G66770.1 Zm00001d028948_P001 AT5G21274.1 17360592
AT5G66770.1 Zm00001d038543_P004 AT5G21274.1 17360592
AT5G66770.1 Zm00001d038545_P001 AT5G21274.1 17360592
AT5G66770.1 Zm00001d041430_P001 AT5G21274.1 17360592
AT5G66770.1 Zm00001d043144_P001 AT5G21274.1 17360592
AT5G66770.1 Zm00001d047597_P001 AT5G21274.1 17360592
AT5G66770.1 Zm00001d052415_P001 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d033834_P001 Maize cytosol, plastid 90.69 93.65
TraesCS4A01G260600.1 Wheat cytosol 78.56 82.02
TraesCS4B01G054000.1 Wheat cytosol 78.73 81.9
TraesCS4D01G054000.1 Wheat cytosol 78.91 81.64
Os03t0723000-01 Rice nucleus 80.67 79.41
HORVU4Hr1G008980.3 Barley mitochondrion, nucleus 59.05 60.76
HORVU4Hr1G008930.3 Barley cytosol, mitochondrion 37.26 60.06
KRH29015 Soybean cytosol 28.82 57.54
Bra012102.1-P Field mustard cytosol 16.7 56.55
KRH24039 Soybean cytosol 42.88 50.73
GSMUA_Achr3P30530_001 Banana cytosol 51.32 50.61
GSMUA_AchrUn_... Banana cytosol 47.45 50.47
AT5G66770.1 Thale cress cytosol 48.68 47.43
GSMUA_Achr4P07320_001 Banana cytosol 46.75 47.42
AT3G50650.1 Thale cress cytosol 43.94 46.13
PGSC0003DMT400038574 Potato cytosol 49.21 45.83
Solyc02g085340.1.1 Tomato cytosol 49.03 45.81
CDY53846 Canola cytosol 46.92 45.8
CDY72338 Canola cytosol 46.92 45.64
VIT_04s0023g01660.t01 Wine grape cytosol 45.17 41.92
Zm00001d015815_P001 Maize cytosol 22.32 30.53
Zm00001d042127_P001 Maize plastid 23.02 29.31
Zm00001d044065_P001 Maize cytosol 24.08 28.84
Zm00001d011881_P001 Maize cytosol 22.67 28.73
Zm00001d021826_P001 Maize cytosol 22.5 28.32
Zm00001d046783_P001 Maize mitochondrion 22.5 28.07
Zm00001d025133_P001 Maize cytosol 23.55 27.13
Zm00001d003657_P001 Maize cytosol, mitochondrion, nucleus 22.67 25.9
Zm00001d038518_P001 Maize cytosol 20.74 23.74
Zm00001d013465_P001 Maize cytosol 26.01 23.68
Zm00001d052464_P001 Maize cytosol, plasma membrane, plastid 20.21 23.61
Zm00001d033680_P001 Maize nucleus 26.01 23.49
Zm00001d042472_P001 Maize cytosol 21.97 23.23
Zm00001d023248_P001 Maize cytosol 20.56 23.12
Zm00001d052463_P001 Maize cytosol 20.91 22.75
Zm00001d052380_P001 Maize plastid 26.54 22.6
Zm00001d005029_P001 Maize plastid 26.89 22.57
Zm00001d009646_P001 Maize plastid 18.8 22.53
Zm00001d037901_P001 Maize cytosol, peroxisome, plastid 18.28 22.51
Zm00001d045507_P001 Maize plastid 23.37 21.59
Zm00001d049249_P001 Maize plastid 27.59 20.26
Zm00001d023247_P001 Maize plastid 17.57 17.86
Protein Annotations
EnsemblPlants:Zm00001d013385_P001EnsemblPlants:Zm00001d013385_T001EnsemblPlantsGene:Zm00001d013385EntrezGene:103625927GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202
InterPro:TF_GRASPANTHER:PTHR31636PANTHER:PTHR31636:SF65PFAM:PF03514PFscan:PS50985ProteinID:AQK63289.1
SEG:segUniParc:UPI0002211788UniProt:A0A1D6GIN1MapMan:15.5.12::
Description
GRAS-transcription factor 55Scarecrow-like protein 7
Coordinates
chr5:-:10169946..10171655
Molecular Weight (calculated)
61236.8 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.056
Length
569 amino acids
Sequence
(BLAST)
001: MAYMCADSGN LMAIAQQVIQ QQQQQQQQEH QRHHHHHLPM PLPLPPPPRQ ALPMPPATAP PHGQIPAASL PYGGGAWPQA DHFFPDAFVG TSAADAVFSD
101: LAAAADFDSD VWMNSLIGDA PVFADSDLER LIFTTPPPPP PVPAPAPAPA SAVAPVDAAA QPEAATPASL PQPAAVAAPA ACSSPSSLDA ACSAPILQSL
201: LACSRTAAAG TGLAAAELAE VRAAASDDGD PAERVAFYFA DALARRLACG GGAQAQPSLA VDSRFAPDEL TLCYKTLNDA CPYSKFAHLT ANQAILEATG
301: AATKIHIVDF GIVQGIQWAA LLQALATRPG EKPSRVRISG VPSPYLGPKP AASLAATSAR LRDFAKLLGV DFEFVPLLRP VHELDRSDFL VEPDETVAVN
401: FMLQLYHLLG DSDEPVRRVL RLVKSLDPSV VTLGEYEVSL NRAGFVDRFA NALLYYKPVF ESLDVAMPRD SPERVRVERC MFGERIRRAI GPEEGAERTD
501: RMAASREWQT LMEWCGFEPV KLSNYAMSQA DLLLWNYDSK YKYSLVELPP AFLSLAWEKQ PLLTVSAWR
Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)
001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
Arabidopsis Description
SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.