CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	KRG89812	AT2G41090.1	17360592
AT5G66770.1	KRG94975	AT2G41090.1	17360592
AT5G66770.1	KRH18664	AT2G41090.1	17360592
AT5G66770.1	KRG89812	AT5G21274.1	17360592
AT5G66770.1	KRG94975	AT5G21274.1	17360592
AT5G66770.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29015	Soybean	cytosol	54.05	91.23
Bra012102.1-P	Field mustard	cytosol	23.49	67.26
AT3G50650.1	Thale cress	cytosol	61.33	54.43
AT5G66770.1	Thale cress	cytosol	65.07	53.6
PGSC0003DMT400038574	Potato	cytosol	65.7	51.72
Solyc02g085340.1.1	Tomato	cytosol	64.86	51.23
CDY72338	Canola	cytosol	62.16	51.11
CDY53846	Canola	cytosol	61.33	50.6
GSMUA_AchrUn_...	Banana	cytosol	53.85	48.41
VIT_04s0023g01660.t01	Wine grape	cytosol	61.54	48.29
GSMUA_Achr3P30530_001	Banana	cytosol	57.17	47.66
TraesCS4B01G054000.1	Wheat	cytosol	50.94	44.79
TraesCS4A01G260600.1	Wheat	cytosol	50.1	44.22
TraesCS4D01G054000.1	Wheat	cytosol	50.52	44.18
GSMUA_Achr4P07320_001	Banana	cytosol	51.35	44.03
Zm00001d033834_P001	Maize	cytosol, plastid	50.31	43.92
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	50.52	43.47
Zm00001d013385_P001	Maize	cytosol, plastid	50.73	42.88
Os03t0723000-01	Rice	nucleus	50.73	42.21
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	28.27	38.53
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	40.54	35.26
KRH34954	Soybean	cytosol	24.95	29.63
KRG92263	Soybean	cytosol	23.7	28.57
KRH29089	Soybean	mitochondrion	26.2	28.51
KRH24117	Soybean	plastid	25.16	27.19
KRG91825	Soybean	nucleus	25.99	26.88
KRH70202	Soybean	cytosol	26.4	26.68
KRH08555	Soybean	cytosol	25.36	25.9
KRH19587	Soybean	cytosol	27.03	24.71
KRH29971	Soybean	cytosol	22.66	24.66
KRH34544	Soybean	cytosol	24.95	24.59
KRH62871	Soybean	cytosol	22.45	24.38
KRH32212	Soybean	cytosol	27.03	24.21
KRH54840	Soybean	cytosol	25.36	24.16
KRH63032	Soybean	cytosol	24.95	23.86
KRH42544	Soybean	cytosol, nucleus, plastid	25.16	23.4
KRH58636	Soybean	nucleus	24.74	22.75
KRH29080	Soybean	cytosol	21.41	22.64
KRG97933	Soybean	nucleus	27.03	22.26
KRH30942	Soybean	cytosol	27.44	22.18
KRH24106	Soybean	cytosol, nucleus, peroxisome	20.79	21.98
KRH03910	Soybean	cytosol	23.08	21.6
KRH57194	Soybean	cytosol	22.45	21.14
KRH13057	Soybean	cytosol	23.91	20.72
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	19.96	20.65
KRH27822	Soybean	nucleus, plastid	19.54	19.87
KRG94590	Soybean	plastid	27.86	19.68
KRH44884	Soybean	cytosol	17.46	19.4
KRH06900	Soybean	plastid	27.65	19.39
KRH03976	Soybean	mitochondrion, nucleus	25.16	18.09
KRH57249	Soybean	plastid	24.53	17.77
KRH40615	Soybean	nucleus, plastid	27.03	15.8
KRH00551	Soybean	nucleus, plastid	27.44	15.68

Protein Annotations

EntrezGene:100800989	MapMan:15.5.12	EMBL:ACUP02007166	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G018100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1LP80	InterPro:IPR005202
EnsemblPlants:KRH24039	ProteinID:KRH24039	ProteinID:KRH24039.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF65	InterPro:TF_GRAS	UniParc:UPI000233D199	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:1265071..1267116

Molecular Weight (calculated)

53808.6 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.284

Length

481 amino acids

Sequence
(BLAST)

001: MAYMCADSGN LMAIAQQVIK QKQQQEQQKQ QQQQQTNPIP WNSTPPLPPT DFPDPFQSDP PFHFQPFRFS DFDSDDWMDS LIATPSSYTT DFPFPSSDLN
101: RLIFPPQSPD SDSPQQPLLK ALSECASLSE TEPDQAAESL SRLRKSVSQH GNPTERVGFY FWQALSRKMW GDKEKMEPSS WEELTLSYKA LNDACPYSKF
201: AHLTANQAIL EATENASNIH ILDFGIVQGI QWAALLQAFA TRASGKPNKI TISGIPAVSL GPSPGPSLSA TGNRLSDFAR LLDLNFVFTP ILTPIHQLDH
301: NSFCIDPNEV LAVNFMLQLY NLLDEPPSAV DTALRLAKSL NPRIVTLGEY EASVTRVGFV NRFRTAFKYF SAVFESLEPN LAADSPERFQ VESLLLGRRI
401: AAVIGPGPVR ESMEDKEQWR VLMERAGFES VSLSHYAISQ AKILLWNYSY SSLFSLVESK PPGFLSLAWK DVPLLTVSSW R

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.