CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH04424
KRH18664
KRH28353
KRH58109
KRH77129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	KRG89812	AT2G41100.1	17360592
AT5G41920.1	KRG94975	AT2G41100.1	17360592
AT5G41920.1	KRH18664	AT2G41100.1	17360592
AT5G41920.1	KRH04424	AT4G37650.1	18500650
AT5G41920.1	KRH28353	AT4G37650.1	18500650
AT5G41920.1	KRH58109	AT4G37650.1	18500650
AT5G41920.1	KRH77129	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29089	Soybean	mitochondrion	91.91	92.53
VIT_03s0017g01660.t01	Wine grape	plastid	73.48	73.98
Bra025456.1-P	Field mustard	mitochondrion	38.65	69.92
CDY64484	Canola	mitochondrion	38.2	69.11
PGSC0003DMT400030652	Potato	cytosol	63.6	68.86
Solyc07g043330.1.1	Tomato	plastid	64.72	66.67
AT5G41920.1	Thale cress	cytosol	60.0	65.93
CDY27670	Canola	cytosol	57.98	63.86
Zm00001d021826_P001	Maize	cytosol	62.92	61.95
Os07t0567700-02	Rice	cytosol	63.6	61.93
TraesCS2D01G208500.1	Wheat	cytosol	61.8	61.25
KXG36498	Sorghum	cytosol, plastid	63.15	61.09
TraesCS2B01G228000.1	Wheat	cytosol	61.57	61.02
TraesCS2A01G200700.1	Wheat	cytosol	61.35	60.67
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	41.35	59.74
HORVU0Hr1G003230.2	Barley	mitochondrion	58.43	56.16
KRH19587	Soybean	cytosol	40.45	34.22
KRH29015	Soybean	cytosol	21.57	33.68
KRH32212	Soybean	cytosol	40.45	33.52
KRG92263	Soybean	cytosol	28.09	31.33
KRH34954	Soybean	cytosol	27.19	29.88
KRH40615	Soybean	nucleus, plastid	50.56	27.34
KRH34544	Soybean	cytosol	29.44	26.84
KRH00551	Soybean	nucleus, plastid	50.79	26.84
KRH29971	Soybean	cytosol	26.52	26.7
KRH62871	Soybean	cytosol	26.52	26.64
KRH29080	Soybean	cytosol	27.19	26.59
KRH24106	Soybean	cytosol, nucleus, peroxisome	27.19	26.59
KRH70202	Soybean	cytosol	28.09	26.26
KRG91825	Soybean	nucleus	27.19	26.02
KRH08555	Soybean	cytosol	27.19	25.69
KRH54840	Soybean	cytosol	28.99	25.54
KRH24039	Soybean	cytosol	27.19	25.16
KRH63032	Soybean	cytosol	28.31	25.05
KRH57194	Soybean	cytosol	28.31	24.66
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	25.62	24.52
KRH27822	Soybean	nucleus, plastid	25.62	24.1
KRH58636	Soybean	nucleus	28.09	23.9
KRH42544	Soybean	cytosol, nucleus, plastid	27.64	23.79
KRH03910	Soybean	cytosol	27.19	23.54
KRH13057	Soybean	cytosol	28.76	23.06
KRG97933	Soybean	nucleus	28.54	21.75
KRH44884	Soybean	cytosol	20.9	21.48
KRH30942	Soybean	cytosol	28.54	21.34
KRG94590	Soybean	plastid	32.13	21.0
KRH06900	Soybean	plastid	32.36	20.99
KRH57249	Soybean	plastid	30.79	20.63
KRH03976	Soybean	mitochondrion, nucleus	30.79	20.48

Protein Annotations

EntrezGene:100815217	MapMan:15.5.12	EMBL:ACUP02007171	EnsemblPlantsGene:GLYMA_12G022600	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048366
GO:GO:0090610	UniProt:I1LPE8	InterPro:IPR005202	EnsemblPlants:KRH24117	ProteinID:KRH24117	ProteinID:KRH24117.1
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF35	InterPro:TF_GRAS	UniParc:UPI000233C8B3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:1653161..1655115

Molecular Weight (calculated)

48964.3 Da

IEP (calculated)

6.323

GRAVY (calculated)

-0.117

Length

445 amino acids

Sequence
(BLAST)

001: MLQSLVPRSP RTSNPNAMKT KRPVDASDLS PADEPSFKRT NFSADRTAAE AVEEQAFDPE PHGGESTGLK LLGLLLQCAE CIAMDNLDFA NDLLPEIAEL
101: SSPYGTSPER VGAYFAQALQ ARVLSSCIGS YSPLTAKSVA LTQSQRIFNA FQSYNSVSPL VKFSHFTANQ AIFQSLDGED SVHIIDLDIM QGLQWPGLFH
201: ILASRSKKIR SVRITGFGSS SELLDSTGRR LADFASSLGL PFEFFPVEGK IGSVTELSQL GVRPNEAIVV HWMHHCLYDI TGSDLGTLRL LTQLRPKLIT
301: TVEQDLSHAG SFLARFVEAL HYYSALFDAL GDGLGEDSLE RHTVEQHLLG CEIRNIVAVG GPKRTGEVKV ERWGEELKRA GFGPVWLRGN PAAQANLLLG
401: MFPWRGYTLL QENASLKLAW KDFSLLIASA WQPQYKNICF IHSSH

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.