Factsheet for Zm00001d021826_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d006721_P001
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d021973_P001
Zm00001d028948_P001
Zm00001d029607_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT5G41920.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT5G41920.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT5G41920.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT5G41920.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT5G41920.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT5G41920.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT5G41920.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT5G41920.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT5G41920.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT5G41920.1	Zm00001d006721_P001	AT4G37650.1	18500650
AT5G41920.1	Zm00001d021973_P001	AT4G37650.1	18500650
AT5G41920.1	Zm00001d029607_P001	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36498	Sorghum	cytosol, plastid	96.9	95.22
Os07t0567700-02	Rice	cytosol	85.18	84.25
TraesCS2D01G208500.1	Wheat	cytosol	83.19	83.74
TraesCS2A01G200700.1	Wheat	cytosol	82.96	83.33
TraesCS2B01G228000.1	Wheat	cytosol	82.74	83.3
HORVU0Hr1G003230.2	Barley	mitochondrion	77.65	75.81
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	47.35	69.48
CDY64484	Canola	mitochondrion	37.39	68.7
Bra025456.1-P	Field mustard	mitochondrion	37.17	68.29
VIT_03s0017g01660.t01	Wine grape	plastid	64.38	65.84
KRH29089	Soybean	mitochondrion	62.83	64.25
PGSC0003DMT400030652	Potato	cytosol	57.96	63.75
KRH24117	Soybean	plastid	61.95	62.92
CDY27670	Canola	cytosol	55.09	61.63
Solyc07g043330.1.1	Tomato	plastid	58.41	61.11
AT5G41920.1	Thale cress	cytosol	54.42	60.74
Zm00001d052380_P001	Maize	plastid	53.76	36.38
Zm00001d005029_P001	Maize	plastid	52.88	35.25
Zm00001d038518_P001	Maize	cytosol	33.85	30.78
Zm00001d042127_P001	Maize	plastid	29.2	29.53
Zm00001d044065_P001	Maize	cytosol	30.97	29.47
Zm00001d015815_P001	Maize	cytosol	26.11	28.37
Zm00001d011881_P001	Maize	cytosol	27.88	28.06
Zm00001d046783_P001	Maize	mitochondrion	27.43	27.19
Zm00001d025133_P001	Maize	cytosol	28.76	26.32
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	27.88	25.3
Zm00001d042472_P001	Maize	cytosol	29.87	25.09
Zm00001d023248_P001	Maize	cytosol	27.65	24.7
Zm00001d033834_P001	Maize	cytosol, plastid	28.76	23.59
Zm00001d009646_P001	Maize	plastid	23.67	22.53
Zm00001d013385_P001	Maize	cytosol, plastid	28.32	22.5
Zm00001d052463_P001	Maize	cytosol	25.89	22.37
Zm00001d013465_P001	Maize	cytosol	30.75	22.24
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	22.57	22.08
Zm00001d033680_P001	Maize	nucleus	30.31	21.75
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	23.01	21.36
Zm00001d045507_P001	Maize	plastid	28.76	21.1
Zm00001d049249_P001	Maize	plastid	35.18	20.52
Zm00001d023247_P001	Maize	plastid	21.68	17.5

Protein Annotations

MapMan:15.5.12	EntrezGene:542138	UniProt:A0A060CZ17	ProteinID:AIB04452.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0048366
GO:GO:0090610	InterPro:IPR005202	ProteinID:ONM58743.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF35	InterPro:TF_GRAS	UniParc:UPI000221DD73	EnsemblPlantsGene:Zm00001d021826	EnsemblPlants:Zm00001d021826_P001	EnsemblPlants:Zm00001d021826_T001
SEG:seg	:	:	:	:	:

Description

GRAS-transcription factor 54Nodulation signaling pathway 2 protein

Coordinates

chr7:+:163785585..163786943

Molecular Weight (calculated)

48413.9 Da

IEP (calculated)

6.446

GRAVY (calculated)

-0.044

Length

452 amino acids

Sequence
(BLAST)

001: MLQGVLSRAP ATDAAAAMKA KRAGASPGEE EEGDGRSARG KRQQLLGLGP ATALASAAAA EEGPETRGLR LLSLLLRCAE AVAMDQLTEA RELLPEIAEL
101: ASPFGSSPER VAAYFGDALC ARVLSSYLGA YSPLALRPLA AAQSRRVAVA FQAYNALSPL VKFSHFTANQ AILQALDGED CLHVIDLDIM QGLQWPGLFH
201: ILASRPRKPR SLRITGLGAS LDVLEATGRR LADFAASLGL PFEFRPIEGK IGHVADAAAL LGSRQRRRDD EATVVHWMHH CLYDVTGSDV GTVRLLRSLR
301: PKLITIVEQD LGHSGDFLGR FVEALHYYSA LFDALGDGAG AAEEESAERY AVERQLLGAE IRNIVAVGGP KRTGEVRVER WSHELRHAGF RPVSLAGSPA
401: AQARLLLGMY PWKGYTLVEE DACLKLGWKD LSLLTASAWE PADDAAASAP TG

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.