Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G200700.1 | Wheat | cytosol | 98.89 | 98.67 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 98.66 | 98.66 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 89.75 | 87.04 |
| Os07t0567700-02 | Rice | cytosol | 86.41 | 84.9 |
| Zm00001d021826_P001 | Maize | cytosol | 83.74 | 83.19 |
| KXG36498 | Sorghum | cytosol, plastid | 83.74 | 81.74 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 46.99 | 68.51 |
| VIT_03s0017g01660.t01 | Wine grape | plastid | 64.14 | 65.16 |
| CDY64484 | Canola | mitochondrion | 35.63 | 65.04 |
| Bra025456.1-P | Field mustard | mitochondrion | 35.41 | 64.63 |
| PGSC0003DMT400030652 | Potato | cytosol | 58.35 | 63.75 |
| KRH29089 | Soybean | mitochondrion | 62.58 | 63.57 |
| KRH24117 | Soybean | plastid | 61.25 | 61.8 |
| Solyc07g043330.1.1 | Tomato | plastid | 59.24 | 61.57 |
| CDY27670 | Canola | cytosol | 53.45 | 59.41 |
| AT5G41920.1 | Thale cress | cytosol | 53.45 | 59.26 |
| TraesCS5D01G148000.1 | Wheat | plastid | 52.78 | 36.29 |
| TraesCS4D01G122000.1 | Wheat | plastid | 52.12 | 34.46 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 28.06 | 31.9 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 34.3 | 31.56 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 20.94 | 29.94 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 20.71 | 29.62 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 29.4 | 29.01 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 27.39 | 28.94 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 19.82 | 28.53 |
| TraesCS3D01G385400.1 | Wheat | cytosol | 31.18 | 27.08 |
| TraesCS3D01G220100.3 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 32.29 | 27.0 |
| TraesCS3D01G385500.1 | Wheat | cytosol | 31.18 | 26.98 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 26.5 | 24.59 |
| TraesCS4D01G338800.1 | Wheat | cytoskeleton, cytosol, peroxisome, plastid | 25.61 | 23.52 |
| TraesCS1D01G421200.1 | Wheat | cytosol | 26.5 | 23.43 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 27.39 | 22.36 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 27.17 | 21.82 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 30.07 | 21.67 |
| TraesCS2D01G095300.1 | Wheat | nucleus | 33.85 | 21.26 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 22.27 | 21.05 |
| TraesCS7D01G053600.1 | Wheat | plastid | 28.29 | 20.26 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G208500.1 | EnsemblPlantsGene:TraesCS2D01G208500 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0048366 | GO:GO:0090610 |
| InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF35 | PFAM:PF03514 | PFscan:PS50985 |
| SEG:seg | MapMan:15.5.12 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:162889761..162891110
Molecular Weight (calculated)
48948.6 Da
IEP (calculated)
6.840
GRAVY (calculated)
-0.184
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQGVLSRAP ATDAMKAKRA ASMPDDEEKA RGKRLQLHGS ASEQGLAAAA GEEGERVAEA PETRGLRLLR LLLRCAEAVA MDQLPEARDM LQEVAELASP
101: FGSSPERVAA YFGDALCARV LSSYLGAYSP LALRPLAAAQ SRRISSAFQA YNALSPLVKF SHFTANKAIL QALDGEDHVH VIDLDIMQGL QWPGLFHMLA
201: SRPRRPLSLR VTGLGASLDV LEATGRRLAD FAASLGLPFE FQPIEGKIGH VADTTALLGP RHRHREATVV HWMHHCLYDV TGSDVGTVRL LKSLRPKLIT
301: IVEQDLGHSG DFLGRFVEAL HYYSALFDAL RDGAGAAEEE RHAVERQLLG AEIRNIVAVG GPKRTGEVRV ERWGDELRRA GFRPVSLAGS PAAQARLLIG
401: MYPWKGYTLA EEDGCLKLGW KDLSLLTASS WEPTEDEHAA VAEQKRHDS
101: FGSSPERVAA YFGDALCARV LSSYLGAYSP LALRPLAAAQ SRRISSAFQA YNALSPLVKF SHFTANKAIL QALDGEDHVH VIDLDIMQGL QWPGLFHMLA
201: SRPRRPLSLR VTGLGASLDV LEATGRRLAD FAASLGLPFE FQPIEGKIGH VADTTALLGP RHRHREATVV HWMHHCLYDV TGSDVGTVRL LKSLRPKLIT
301: IVEQDLGHSG DFLGRFVEAL HYYSALFDAL RDGAGAAEEE RHAVERQLLG AEIRNIVAVG GPKRTGEVRV ERWGDELRRA GFRPVSLAGS PAAQARLLIG
401: MYPWKGYTLA EEDGCLKLGW KDLSLLTASS WEPTEDEHAA VAEQKRHDS
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.