Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G271000.1 | Wheat | cytosol | 98.23 | 98.71 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 97.91 | 98.23 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 95.51 | 96.28 |
| Os03t0707600-01 | Rice | nucleus | 86.68 | 86.4 |
| Zm00001d033680_P001 | Maize | nucleus | 86.84 | 85.87 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 44.46 | 84.97 |
| EER93592 | Sorghum | cytosol | 85.39 | 84.85 |
| Zm00001d013465_P001 | Maize | cytosol | 84.27 | 84.0 |
| GSMUA_Achr10P... | Banana | cytosol | 56.18 | 73.22 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 53.61 | 69.73 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 52.49 | 63.25 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 52.33 | 63.18 |
| KRH58636 | Soybean | nucleus | 52.81 | 62.91 |
| AT1G14920.1 | Thale cress | nucleus | 51.85 | 60.6 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 52.81 | 59.17 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 54.57 | 57.63 |
| Bra024875.1-P | Field mustard | nucleus | 52.33 | 56.89 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 52.17 | 56.82 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 52.49 | 55.71 |
| CDY04092 | Canola | cytosol | 46.87 | 54.68 |
| CDY64837 | Canola | cytosol | 47.19 | 54.24 |
| Bra017443.1-P | Field mustard | cytosol | 47.03 | 53.56 |
| TraesCS3D01G220100.3 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 34.83 | 40.41 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 25.2 | 34.51 |
| TraesCS4D01G338800.1 | Wheat | cytoskeleton, cytosol, peroxisome, plastid | 26.97 | 34.36 |
| TraesCS1D01G421200.1 | Wheat | cytosol | 25.68 | 31.5 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 15.25 | 30.25 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 15.25 | 30.25 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 19.1 | 30.13 |
| TraesCS2D01G208500.1 | Wheat | cytosol | 21.67 | 30.07 |
| TraesCS3D01G385500.1 | Wheat | cytosol | 24.56 | 29.48 |
| TraesCS3D01G385400.1 | Wheat | cytosol | 24.24 | 29.21 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 19.9 | 29.18 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 14.29 | 28.53 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 20.71 | 26.43 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 23.27 | 26.36 |
| TraesCS2D01G095300.1 | Wheat | nucleus | 29.53 | 25.73 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 22.15 | 24.69 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 18.94 | 24.38 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 18.46 | 24.21 |
| TraesCS5D01G148000.1 | Wheat | plastid | 25.04 | 23.89 |
| TraesCS4D01G122000.1 | Wheat | plastid | 25.84 | 23.71 |
| TraesCS7D01G053600.1 | Wheat | plastid | 23.27 | 23.13 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G040400.1 | EnsemblPlantsGene:TraesCS4D01G040400 | Gene3D:1.10.10.1290 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:DELLA_N_sf | InterPro:IPR005202 | InterPro:IPR038088 | InterPro:TF_DELLA | InterPro:TF_DELLA_N |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | PFAM:PF03514 | PFAM:PF12041 | PFscan:PS50985 |
| SEG:seg | SMART:SM01129 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | : |
Description
No Description!
Coordinates
chr4D:+:18781062..18782933
Molecular Weight (calculated)
65340.9 Da
IEP (calculated)
4.749
GRAVY (calculated)
-0.125
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREYQDAGG SGGGGGGMGS SEDKMMVSAA AGEGEEVDEL LAALGYKVRA SDMADVAQKL EQLEMAMGMG GVGAGAAPDD SFATHLATDT VHYNPTDLSS
101: WVESMLSELN APPPPLPPAP QLNASTSSTV TGSGGYFDLP PSVDSSSSIY ALRPIPSPAG ATAPADLSAD SVRDPKRMRT GGSSTSSSSS SSSSLGGGAR
201: SSVVEAAPPV AAAANATPAL PVVVVDTQEA GIRLVHALLA CAEAVQQENL SAAEALVKQI PLLAASQGGA MRKVAAYFGE ALARRVFRFR PQPDSSLLDA
301: AFADLLHAHF YESCPYLKFA HFTANQAILE AFAGCRRVHV VDFGIKQGMQ WPALLQALAL RPGGPPSFRL TGVGPPQPDE TDALQQVGWK LAQFAHTIRV
401: DFQYRGLVAA TLADLEPFML QPEGEEDPNE EPEVIAVNSV FEMHRLLAQP GALEKVLGTV RAVRPRIVTV VEQEANHNSG TFLDRFTESL HYYSTMFDSL
501: EGGSSGGGPS EVSSGAAAAP AAAGTDQVMS EVYLGRQICN VVACEGAERT ERHETLGQWR NRLGNAGFET VHLGSNAYKQ ASTLLALFAG GDGYKVEEKE
601: GCLTLGWHTR PLIATSAWRL AGP
101: WVESMLSELN APPPPLPPAP QLNASTSSTV TGSGGYFDLP PSVDSSSSIY ALRPIPSPAG ATAPADLSAD SVRDPKRMRT GGSSTSSSSS SSSSLGGGAR
201: SSVVEAAPPV AAAANATPAL PVVVVDTQEA GIRLVHALLA CAEAVQQENL SAAEALVKQI PLLAASQGGA MRKVAAYFGE ALARRVFRFR PQPDSSLLDA
301: AFADLLHAHF YESCPYLKFA HFTANQAILE AFAGCRRVHV VDFGIKQGMQ WPALLQALAL RPGGPPSFRL TGVGPPQPDE TDALQQVGWK LAQFAHTIRV
401: DFQYRGLVAA TLADLEPFML QPEGEEDPNE EPEVIAVNSV FEMHRLLAQP GALEKVLGTV RAVRPRIVTV VEQEANHNSG TFLDRFTESL HYYSTMFDSL
501: EGGSSGGGPS EVSSGAAAAP AAAGTDQVMS EVYLGRQICN VVACEGAERT ERHETLGQWR NRLGNAGFET VHLGSNAYKQ ASTLLALFAG GDGYKVEEKE
601: GCLTLGWHTR PLIATSAWRL AGP
001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
Arabidopsis Description
GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.