Factsheet for VIT_01s0011g05260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g00360.t01
VIT_01s0010g03830.t01
VIT_04s0023g03180.t01
VIT_07s0104g00930.t01
VIT_08s0007g06270.t01
VIT_08s0040g01560.t01
VIT_09s0002g04010.t01
VIT_10s0042g01070.t01
VIT_10s0116g01910.t01
VIT_10s0116g01920.t01
VIT_11s0065g00170.t01
VIT_14s0030g00440.t01
VIT_17s0000g03690.t01
VIT_18s0001g05020.t01
VIT_18s0001g09700.t01
VIT_19s0014g00220.t01
VIT_19s0027g00740.t01
VIT_19s0090g01700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14920.1	VIT_18s0001g05020.t01	AT1G22160.1	21798944
AT1G14920.1	VIT_19s0014g00220.t01	AT1G53510.1	21798944
AT1G14920.1	VIT_19s0027g00740.t01	AT1G79110.1	23482857
AT1G14920.1	VIT_08s0040g01560.t01	AT2G36990.1	21798944
AT1G14920.1	VIT_14s0030g00440.t01	AT3G05120.1	16709201
AT1G14920.1	VIT_14s0030g00440.t01	AT3G05120.1	17194763
AT1G14920.1	VIT_14s0030g00440.t01	AT3G05120.1	17416730
AT1G14920.1	VIT_14s0030g00440.t01	AT3G05120.1	18827182
AT1G14920.1	VIT_14s0030g00440.t01	AT3G05120.1	19500306
AT1G14920.1	VIT_19s0027g00740.t01	AT3G12920.1	23482857
AT1G14920.1	VIT_09s0002g04010.t01	AT3G16250.1	21798944
AT1G14920.1	VIT_04s0023g03180.t01	AT3G51180.1	21798944
AT1G14920.1	VIT_07s0104g00930.t01	AT3G63010.1	16709201
AT1G14920.1	VIT_07s0104g00930.t01	AT3G63010.1	17194763
AT1G14920.1	VIT_07s0104g00930.t01	AT3G63010.1	18827182
AT1G14920.1	VIT_07s0104g00930.t01	AT3G63010.1	19500306
AT1G14920.1	VIT_10s0042g01070.t01	AT4G19700.1	23482857
AT1G14920.1	VIT_01s0010g00360.t01	AT4G20150.1	21798944
AT1G14920.1	VIT_01s0010g03830.t01	AT4G20150.1	21798944
AT1G14920.1	VIT_18s0001g09700.t01	AT4G24210.1	15155881
AT1G14920.1	VIT_18s0001g09700.t01	AT4G24210.1	15161962
AT1G14920.1	VIT_18s0001g09700.t01	AT4G24210.1	17194763
AT1G14920.1	VIT_19s0090g01700.t01	AT5G16320.1	21798944
AT1G14920.1	VIT_14s0030g00440.t01	AT5G27320.1	16709201
AT1G14920.1	VIT_14s0030g00440.t01	AT5G27320.1	17194763
AT1G14920.1	VIT_14s0030g00440.t01	AT5G27320.1	18827182
AT1G14920.1	VIT_14s0030g00440.t01	AT5G27320.1	19500306
AT1G14920.1	VIT_17s0000g03690.t01	AT5G38420.1	21798944
AT1G14920.1	VIT_10s0042g01070.t01	AT5G45100.1	23482857
AT2G01570.1	VIT_11s0065g00170.t01	AT1G27370.1	22942378
AT2G01570.1	VIT_19s0014g00220.t01	AT1G53510.1	21798944
AT2G01570.1	VIT_19s0027g00740.t01	AT1G79110.1	23482857
AT2G01570.1	VIT_08s0007g06270.t01	AT2G42200.1	22942378
AT2G01570.1	VIT_14s0030g00440.t01	AT3G05120.1	16709201
AT2G01570.1	VIT_14s0030g00440.t01	AT3G05120.1	17194763
AT2G01570.1	VIT_14s0030g00440.t01	AT3G05120.1	17416730
AT2G01570.1	VIT_14s0030g00440.t01	AT3G05120.1	19500306
AT2G01570.1	VIT_19s0027g00740.t01	AT3G12920.1	23482857
AT2G01570.1	VIT_09s0002g04010.t01	AT3G16250.1	21798944
AT2G01570.1	VIT_07s0104g00930.t01	AT3G63010.1	16709201
AT2G01570.1	VIT_07s0104g00930.t01	AT3G63010.1	17194763
AT2G01570.1	VIT_07s0104g00930.t01	AT3G63010.1	18827182
AT2G01570.1	VIT_07s0104g00930.t01	AT3G63010.1	19429606
AT2G01570.1	VIT_07s0104g00930.t01	AT3G63010.1	19500306
AT2G01570.1	VIT_10s0116g01910.t01	AT4G04770.1	21798944
AT2G01570.1	VIT_10s0116g01920.t01	AT4G04770.1	21798944
AT2G01570.1	VIT_10s0042g01070.t01	AT4G19700.1	23482857
AT2G01570.1	VIT_18s0001g09700.t01	AT4G24210.1	15155881
AT2G01570.1	VIT_18s0001g09700.t01	AT4G24210.1	15161962
AT2G01570.1	VIT_19s0090g01700.t01	AT5G16320.1	21798944
AT2G01570.1	VIT_14s0030g00440.t01	AT5G27320.1	16709201
AT2G01570.1	VIT_14s0030g00440.t01	AT5G27320.1	17194763
AT2G01570.1	VIT_14s0030g00440.t01	AT5G27320.1	19500306
AT2G01570.1	VIT_10s0042g01070.t01	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42544	Soybean	cytosol, nucleus, plastid	62.37	71.18
KRH58636	Soybean	nucleus	62.37	70.36
AT1G14920.1	Thale cress	nucleus	63.39	70.17
VIT_14s0006g00640.t01	Wine grape	cytosol	66.61	69.07
CDY36236	Canola	cytosol, nucleus, plastid	64.75	68.7
Bra024875.1-P	Field mustard	nucleus	64.75	66.67
CDY17662	Canola	cytosol, nucleus, plastid	64.58	66.61
AT2G01570.1	Thale cress	mitochondrion, nucleus	65.59	65.93
CDY04092	Canola	cytosol	58.64	64.79
CDY64837	Canola	cytosol	59.15	64.39
Bra017443.1-P	Field mustard	cytosol	58.81	63.44
TraesCS4A01G466700.1	Wheat	cytosol, nucleus, peroxisome	34.07	61.66
GSMUA_Achr8P18250_001	Banana	cytosol	48.98	60.33
GSMUA_Achr10P...	Banana	cytosol	47.63	58.79
HORVU4Hr1G006930.1	Barley	nucleus	57.46	54.85
TraesCS4A01G271000.1	Wheat	cytosol	57.46	54.68
TraesCS4D01G040400.1	Wheat	cytosol	57.63	54.57
TraesCS4B01G043100.1	Wheat	cytosol	57.29	54.43
Os03t0707600-01	Rice	nucleus	57.46	54.24
Zm00001d013465_P001	Maize	cytosol	56.95	53.76
GSMUA_Achr1P21300_001	Banana	nucleus	46.95	53.68
Zm00001d033680_P001	Maize	nucleus	57.12	53.49
EER93592	Sorghum	cytosol	56.44	53.11
VIT_11s0016g04630.t01	Wine grape	plastid	43.05	47.74
VIT_18s0076g00200.t01	Wine grape	cytosol	18.98	34.36
VIT_03s0017g01660.t01	Wine grape	plastid	24.41	32.58
VIT_13s0019g01220.t01	Wine grape	cytosol	25.59	31.59
VIT_06s0009g02390.t01	Wine grape	cytosol	25.08	31.22
VIT_19s0015g01930.t01	Wine grape	cytosol	21.53	30.75
VIT_19s0085g00540.t01	Wine grape	cytosol	26.61	29.62
VIT_17s0000g10300.t01	Wine grape	nucleus	25.59	29.09
VIT_07s0005g03700.t01	Wine grape	cytosol	22.37	27.1
VIT_14s0068g01610.t01	Wine grape	plastid	30.51	26.95
VIT_02s0025g04000.t01	Wine grape	plastid	26.44	23.78
VIT_08s0056g00050.t01	Wine grape	nucleus	27.97	21.1
VIT_04s0023g01660.t01	Wine grape	cytosol	20.85	20.07

Protein Annotations

Gene3D:1.10.10.1290	EntrezGene:100232937	wikigene:100232937	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1
ProteinID:AAM19210	ProteinID:AAM19210.1	ProteinID:AAP20096	ProteinID:AAP20096.1	ProteinID:AEK06229	ProteinID:AEK06229.1
EMBL:AF378125	EMBL:AY256862	ProteinID:CCB50813	ProteinID:CCB50813.1	ncoils:Coil	InterPro:DELLA_N_sf
UniProt:F6HFG4	EMBL:FN595752	GO:GO:0000003	GO:GO:0000989	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0003712	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009737	GO:GO:0009740	GO:GO:0009791
GO:GO:0009863	GO:GO:0009867	GO:GO:0009938	GO:GO:0009987	GO:GO:0010187	GO:GO:0042538
GO:GO:0043565	GO:GO:2000033	GO:GO:2000377	EMBL:HQ834311	InterPro:IPR005202	InterPro:IPR038088
EMBL:KY765590	EMBL:KY765591	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF47	UniProt:Q8S4W7	SMART:SM01129	TIGR:TC56894	InterPro:TF_DELLA	InterPro:TF_DELLA_N
InterPro:TF_GRAS	UniParc:UPI00000A1EEC	ArrayExpress:VIT_01s0011g05260	EnsemblPlantsGene:VIT_01s0011g05260	EnsemblPlants:VIT_01s0011g05260.t01	EntrezGene:VVGAI1
wikigene:VVGAI1	unigene:Vvi.134	RefSeq:XP_002284648	RefSeq:XP_002284648.1	SEG:seg	:

Description

GAI1DELLA1 [Source:UniProtKB/TrEMBL;Acc:F6HFG4]

Coordinates

chr1:-:4895037..4897415

Molecular Weight (calculated)

64870.0 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.276

Length

590 amino acids

Sequence
(BLAST)

001: MKREYHHPHH PTCSTSPTGK GKMWDADPQQ DAGMDELLAV LGYNVKASDM AEVAQKLEQL EEVIVNAQED GLSHLASETV HYNPSDLSNW LGSMLSEFNP
101: TPNCALDNPF LPPISPLDYT NCSTQPKQEP SIFDSPSLDY DLKAIPGKAL YSHIEQPPQQ PPAPPLYQRD NKRLKPTTSA TANSVSSVIG GWGVPTESAR
201: PVVLVDSQET GIRLVHTLMA CAEAVQQENL KLAEALVKQI GFLAVSQAGA MRKVATYFAE GLARRIYRLY PDKPLDSSFS DILQMHFYET CPYLKFAHFT
301: ANQAILEAFE GKKRVHVIDF SMKQGMQWPA LMQALALRPG GPPSFRLTGI GPPSTDNTDH LHEVGWKLAQ LAETIHVEFE YRGFVANSLA DLDASMLELR
401: DGESVAVNSV FELHSLLARP GGIERVLSAV KDMKPDIVTI VEQEANHNGP VFLDRFTESL HYYSTLFDSL EGCGVSPVNT QDKLMSEVYL GQQICNVVAC
501: EGPERVERHE TLAQWRARLG SAGFDPVNLG SNAFKQASML LALFAGGDGY RVEENNGCLM LGWHTRPLIA TSAWQLANKP ALPSSTPASN

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.