Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g05260.t01 | |
| VIT_14s0006g00640.t01 | |
| VIT_18s0001g09700.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71503 | Soybean | cytosol | 83.14 | 83.63 |
| Solyc06g008870.2.1 | Tomato | cytosol | 83.72 | 83.48 |
| PGSC0003DMT400056562 | Potato | cytosol | 83.43 | 83.19 |
| PGSC0003DMT400009831 | Potato | cytosol | 83.14 | 82.9 |
| KRH31953 | Soybean | cytosol | 81.69 | 81.92 |
| Solyc09g074270.2.1 | Tomato | cytosol | 81.4 | 81.16 |
| KRH67123 | Soybean | cytosol | 79.07 | 78.61 |
| AT3G63010.1 | Thale cress | cytosol | 79.94 | 76.82 |
| CDY67478 | Canola | cytosol | 79.65 | 76.54 |
| CDY63333 | Canola | cytosol | 79.07 | 75.98 |
| CDX89165 | Canola | cytosol | 79.36 | 75.83 |
| Bra040420.1-P | Field mustard | cytosol | 78.78 | 75.28 |
| Bra003520.1-P | Field mustard | cytosol | 78.2 | 75.14 |
| CDX67913 | Canola | cytosol | 77.91 | 74.86 |
| CDY70667 | Canola | cytosol | 77.33 | 74.3 |
| Bra007722.1-P | Field mustard | cytosol | 77.33 | 74.3 |
| CDX93945 | Canola | extracellular, golgi | 76.16 | 73.6 |
| VIT_14s0030g00440.t01 | Wine grape | cytosol | 79.65 | 72.68 |
| GSMUA_Achr3P24930_001 | Banana | cytosol | 62.79 | 70.59 |
| GSMUA_Achr6P16090_001 | Banana | cytosol | 61.92 | 69.38 |
| GSMUA_Achr5P27430_001 | Banana | cytosol | 61.92 | 69.16 |
| GSMUA_Achr10P... | Banana | cytosol | 62.21 | 69.03 |
| GSMUA_Achr8P05910_001 | Banana | cytosol | 60.76 | 68.52 |
| GSMUA_Achr5P27450_001 | Banana | mitochondrion | 62.21 | 63.31 |
| TraesCS1A01G255100.1 | Wheat | cytosol | 63.08 | 61.13 |
| TraesCS1B01G265900.1 | Wheat | cytosol | 63.08 | 61.13 |
| HORVU1Hr1G060810.1 | Barley | cytosol | 62.5 | 60.73 |
| Os05t0407500-01 | Rice | cytosol, nucleus | 62.5 | 60.73 |
| TraesCS1D01G254500.1 | Wheat | cytosol | 62.5 | 60.73 |
| Zm00001d010308_P001 | Maize | cytosol, plastid | 61.34 | 60.29 |
| Zm00001d038165_P003 | Maize | cytosol | 61.34 | 60.11 |
| KXG21982 | Sorghum | cytosol | 61.92 | 60.0 |
| VIT_07s0130g00320.t01 | Wine grape | plastid | 39.83 | 40.9 |
| VIT_07s0130g00340.t01 | Wine grape | plastid | 39.24 | 40.3 |
| VIT_18s0089g00370.t01 | Wine grape | cytosol | 38.08 | 39.7 |
| VIT_18s0089g00390.t01 | Wine grape | endoplasmic reticulum, mitochondrion, plastid | 36.34 | 39.06 |
| VIT_18s0089g00400.t01 | Wine grape | mitochondrion | 37.21 | 37.76 |
| VIT_18s0089g00380.t01 | Wine grape | mitochondrion | 35.47 | 37.08 |
| VIT_16s0022g02430.t01 | Wine grape | cytosol | 20.35 | 32.26 |
| VIT_16s0022g02300.t01 | Wine grape | cytosol | 27.03 | 31.53 |
| VIT_13s0084g00130.t01 | Wine grape | cytosol | 30.23 | 30.95 |
| VIT_06s0009g00980.t01 | Wine grape | cytosol | 28.49 | 30.91 |
| VIT_08s0032g00700.t01 | Wine grape | cytosol | 28.2 | 30.6 |
| VIT_08s0040g00810.t01 | Wine grape | cytosol | 30.52 | 30.43 |
| VIT_15s0048g01390.t01 | Wine grape | plastid | 29.65 | 30.36 |
| VIT_04s0008g05350.t01 | Wine grape | cytosol | 27.33 | 30.32 |
| VIT_04s0008g05390.t01 | Wine grape | cytosol | 27.33 | 30.32 |
| VIT_16s0100g00010.t01 | Wine grape | cytosol | 28.2 | 29.75 |
| VIT_16s0022g02440.t01 | Wine grape | cytosol | 17.44 | 29.7 |
| VIT_04s0008g05360.t01 | Wine grape | cytosol, plastid | 26.74 | 29.58 |
| VIT_08s0040g00960.t01 | Wine grape | cytosol | 28.78 | 29.55 |
| VIT_15s0048g01350.t01 | Wine grape | cytosol | 28.2 | 28.96 |
| VIT_08s0032g00510.t01 | Wine grape | cytosol | 27.33 | 28.92 |
| VIT_04s0008g05410.t01 | Wine grape | cytosol | 25.29 | 28.16 |
| VIT_04s0008g05370.t01 | Wine grape | cytosol | 25.29 | 28.06 |
| VIT_04s0008g05400.t01 | Wine grape | cytosol | 25.29 | 28.06 |
| VIT_04s0008g05380.t01 | Wine grape | cytosol | 25.0 | 27.83 |
| VIT_01s0011g03270.t01 | Wine grape | cytosol | 28.2 | 27.4 |
| VIT_14s0006g03180.t01 | Wine grape | cytosol | 27.03 | 27.19 |
Protein Annotations
| EntrezGene:100249385 | wikigene:100249385 | MapMan:11.6.2.1 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_3 |
| ProteinID:CCB56792 | ProteinID:CCB56792.1 | UniProt:F6HQ36 | EMBL:FN596005 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005975 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009719 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009939 | GO:GO:0009987 | GO:GO:0010325 | GO:GO:0010331 |
| GO:GO:0016787 | GO:GO:0048444 | InterPro:IPR029058 | EMBL:KY765600 | EMBL:KY765601 | EMBL:KY765602 |
| EMBL:KY765603 | EntrezGene:LOC100249385 | wikigene:LOC100249385 | InterPro:Lipase_GDXG_HIS_AS | InterPro:Lipase_GDXG_put_SER_AS | PFAM:PF07859 |
| ScanProsite:PS01173 | ScanProsite:PS01174 | PANTHER:PTHR23024 | PANTHER:PTHR23024:SF98 | MEROPS:S09.A10 | SUPFAM:SSF53474 |
| TIGR:TC56624 | UniParc:UPI00015CAEAD | ArrayExpress:VIT_07s0104g00930 | EnsemblPlantsGene:VIT_07s0104g00930 | EnsemblPlants:VIT_07s0104g00930.t01 | unigene:Vvi.2048 |
| RefSeq:XP_002271700 | RefSeq:XP_002271700.1 | : | : | : | : |
Description
GID1b [Source:UniProtKB/TrEMBL;Acc:F6HQ36]
Coordinates
chr7:-:2061408..2063888
Molecular Weight (calculated)
38966.1 Da
IEP (calculated)
6.351
GRAVY (calculated)
-0.303
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSDEVNHN ESKRVVPLNT WILISNFKLA YNLLRRPDGT FERELAEFLE RKAPANSFPV DGVFSFDIVD KTTGLLNRVY QPAPENEAQW GIIELEKPLS
101: TTEIVPVILF FHGGSFTHSS ANSAIYDYFC RRLVGNCKAV VVSVNYRRSP EHRYPCAYDD GWAALKWVKS RSWLQSGKDS KVHVYLAGDS SGGNITHHVA
201: VRAAESGIEV LGNILLHPMF GGQERTESEK RLDGKYFVTI QDRDWYWRAF LPEGEDRDHP ACNPFGPRGK SLEGLNFPKS LVVVAGFDLV QDWQLAYVEG
301: LKKAGQDVNL LFLEQATIGF YFLPNNDHFY CLMEEIKNFV KSNC
101: TTEIVPVILF FHGGSFTHSS ANSAIYDYFC RRLVGNCKAV VVSVNYRRSP EHRYPCAYDD GWAALKWVKS RSWLQSGKDS KVHVYLAGDS SGGNITHHVA
201: VRAAESGIEV LGNILLHPMF GGQERTESEK RLDGKYFVTI QDRDWYWRAF LPEGEDRDHP ACNPFGPRGK SLEGLNFPKS LVVVAGFDLV QDWQLAYVEG
301: LKKAGQDVNL LFLEQATIGF YFLPNNDHFY CLMEEIKNFV KSNC
001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP
Arabidopsis Description
GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.