Factsheet for Bra040420.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013776.1-P
Bra017443.1-P
Bra024875.1-P
Bra031991.1-P
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63010.1	Bra039762.1-P	AT1G66350.1	16709201
AT3G63010.1	Bra039762.1-P	AT1G66350.1	19500306
AT3G63010.1	Bra017443.1-P	AT2G01570.1	16709201
AT3G63010.1	Bra024875.1-P	AT2G01570.1	16709201
AT3G63010.1	Bra017443.1-P	AT2G01570.1	17194763
AT3G63010.1	Bra024875.1-P	AT2G01570.1	17194763
AT3G63010.1	Bra017443.1-P	AT2G01570.1	18827182
AT3G63010.1	Bra024875.1-P	AT2G01570.1	18827182
AT3G63010.1	Bra017443.1-P	AT2G01570.1	19429606
AT3G63010.1	Bra024875.1-P	AT2G01570.1	19429606
AT3G63010.1	Bra017443.1-P	AT2G01570.1	19500306
AT3G63010.1	Bra024875.1-P	AT2G01570.1	19500306
AT3G63010.1	Bra031991.1-P	AT3G03450.1	16709201
AT3G63010.1	Bra031991.1-P	AT3G03450.1	19500306
AT3G63010.1	Bra013776.1-P	AT4G24210.1	16709201
AT3G63010.1	Bra013776.1-P	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89165	Canola	cytosol	99.44	99.44
Bra003520.1-P	Field mustard	cytosol	93.33	93.85
Bra007722.1-P	Field mustard	cytosol	91.11	91.62
AT3G63010.1	Thale cress	cytosol	90.56	91.06
VIT_07s0104g00930.t01	Wine grape	cytosol	75.28	78.78
Solyc06g008870.2.1	Tomato	cytosol	74.72	77.97
PGSC0003DMT400056562	Potato	cytosol	74.44	77.68
PGSC0003DMT400009831	Potato	cytosol	73.61	76.81
Solyc09g074270.2.1	Tomato	cytosol	71.67	74.78
KRH71503	Soybean	cytosol	70.56	74.27
KRH31953	Soybean	cytosol	69.17	72.59
KRH67123	Soybean	cytosol	68.89	71.68
Bra009970.1-P	Field mustard	cytosol	68.06	71.01
GSMUA_Achr3P24930_001	Banana	cytosol	57.5	67.65
GSMUA_Achr6P16090_001	Banana	cytosol	57.22	67.1
GSMUA_Achr5P27430_001	Banana	cytosol	56.67	66.23
GSMUA_Achr8P05910_001	Banana	cytosol	56.11	66.23
GSMUA_Achr10P...	Banana	cytosol	56.11	65.16
GSMUA_Achr5P27450_001	Banana	mitochondrion	56.67	60.35
Os05t0407500-01	Rice	cytosol, nucleus	58.61	59.6
Bra039460.1-P	Field mustard	cytosol	64.44	58.59
TraesCS1B01G265900.1	Wheat	cytosol	57.5	58.31
TraesCS1A01G255100.1	Wheat	cytosol	57.5	58.31
Zm00001d010308_P001	Maize	cytosol, plastid	56.39	58.0
HORVU1Hr1G060810.1	Barley	cytosol	56.94	57.91
KXG21982	Sorghum	cytosol	56.94	57.75
TraesCS1D01G254500.1	Wheat	cytosol	56.67	57.63
Zm00001d038165_P003	Maize	cytosol	56.11	57.55
Bra026494.1-P	Field mustard	cytosol	36.11	38.81
Bra009691.1-P	Field mustard	cytosol	35.0	37.61
Bra005899.1-P	Field mustard	cytosol	29.17	31.44
Bra009207.1-P	Field mustard	cytosol	28.89	31.33
Bra004924.1-P	Field mustard	cytosol	27.5	30.56
Bra008651.1-P	Field mustard	cytosol	27.78	30.12
Bra035904.1-P	Field mustard	cytosol	26.11	28.66
Bra004925.1-P	Field mustard	cytosol	25.28	28.09
Bra029278.1-P	Field mustard	cytosol	25.0	27.95
Bra004026.1-P	Field mustard	cytosol	25.28	27.74
Bra027693.1-P	Field mustard	cytosol	24.17	25.82
Bra038363.1-P	Field mustard	cytosol	24.17	25.82
Bra004327.1-P	Field mustard	cytosol	23.89	25.75
Bra004326.1-P	Field mustard	cytosol	23.89	25.75
Bra029276.1-P	Field mustard	cytosol	18.33	24.18

Protein Annotations

MapMan:11.6.2.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	EnsemblPlantsGene:Bra040420	EnsemblPlants:Bra040420.1
EnsemblPlants:Bra040420.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS	UniProt:M4FH42	PFAM:PF07859	ScanProsite:PS01173	PANTHER:PTHR23024
PANTHER:PTHR23024:SF353	SUPFAM:SSF53474	UniParc:UPI000254526A	:	:	:

Description

AT3G63010 (E=5e-195) ATGID1B, GID1B | GID1B (GA INSENSITIVE DWARF1B); hydrolase

Coordinates

chrA04:+:115439..116740

Molecular Weight (calculated)

40520.2 Da

IEP (calculated)

7.160

GRAVY (calculated)

-0.221

Length

360 amino acids

Sequence
(BLAST)

001: MTMAGGNEVN LNECKRIVPL NTWVLISNFK LSYTLLRRPD GSFNRHLAEF LDRKVPSNSF PLDGVFSFDH LDSTTNLLTR IYLPAPLDPS RHGTVDLTEP
101: LSTTEIVPVL IFFHGGSFTH SSANSAIYDT FCRRLVTICG VVVVSVDYRR SPEHRYPCAY DDGWNALKWV KSRIWLRSGK DSSVYGYLAG DSSGGNIAHN
201: VAVRATNEGV KVLGNILLHP MFGGVERTQS EKRLDGKYFV TVQDRDWYWR AYLPEGEDRD HPACNPFGPR GQSLEGVNFP KSLVVVAGLD LVQDWQLAYV
301: DGLKKTGHDV NLLYLKQATI GFYFLPNNDH FHCLMDELKK FVHSIEECSQ SKSSPILLSL

Best Arabidopsis Sequence Match ( AT3G63010.1 )
(BLAST)

001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP

Arabidopsis Description

GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.