Factsheet for GSMUA_Achr5P27450_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21300_001
GSMUA_Achr8P18250_001
GSMUA_Achr9P22610_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	16709201
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	16709201
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	16709201
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	17194763
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	17194763
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	17194763
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	17416730
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	17416730
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	17416730
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	18827182
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	18827182
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	18827182
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	19500306
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	19500306
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	19500306
AT3G05120.1	GSMUA_Achr10P...	AT2G01570.1	16709201
AT3G05120.1	GSMUA_Achr1P21300_001	AT2G01570.1	16709201
AT3G05120.1	GSMUA_Achr8P18250_001	AT2G01570.1	16709201
AT3G05120.1	GSMUA_Achr10P...	AT2G01570.1	17194763
AT3G05120.1	GSMUA_Achr1P21300_001	AT2G01570.1	17194763
AT3G05120.1	GSMUA_Achr8P18250_001	AT2G01570.1	17194763
AT3G05120.1	GSMUA_Achr10P...	AT2G01570.1	17416730
AT3G05120.1	GSMUA_Achr1P21300_001	AT2G01570.1	17416730
AT3G05120.1	GSMUA_Achr8P18250_001	AT2G01570.1	17416730
AT3G05120.1	GSMUA_Achr10P...	AT2G01570.1	19500306
AT3G05120.1	GSMUA_Achr1P21300_001	AT2G01570.1	19500306
AT3G05120.1	GSMUA_Achr8P18250_001	AT2G01570.1	19500306
AT3G05120.1	GSMUA_Achr9P22610_001	AT4G24210.1	16709201
AT3G05120.1	GSMUA_Achr9P22610_001	AT4G24210.1	19500306
AT3G63010.1	GSMUA_Achr10P...	AT1G14920.1	16709201
AT3G63010.1	GSMUA_Achr1P21300_001	AT1G14920.1	16709201
AT3G63010.1	GSMUA_Achr8P18250_001	AT1G14920.1	16709201
AT3G63010.1	GSMUA_Achr10P...	AT1G14920.1	17194763
AT3G63010.1	GSMUA_Achr1P21300_001	AT1G14920.1	17194763
AT3G63010.1	GSMUA_Achr8P18250_001	AT1G14920.1	17194763
AT3G63010.1	GSMUA_Achr10P...	AT1G14920.1	18827182
AT3G63010.1	GSMUA_Achr1P21300_001	AT1G14920.1	18827182
AT3G63010.1	GSMUA_Achr8P18250_001	AT1G14920.1	18827182
AT3G63010.1	GSMUA_Achr10P...	AT1G14920.1	19500306
AT3G63010.1	GSMUA_Achr1P21300_001	AT1G14920.1	19500306
AT3G63010.1	GSMUA_Achr8P18250_001	AT1G14920.1	19500306
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	16709201
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	16709201
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	16709201
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	17194763
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	17194763
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	17194763
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	18827182
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	18827182
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	18827182
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	19429606
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	19429606
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	19429606
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	19500306
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	19500306
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	19500306
AT3G63010.1	GSMUA_Achr9P22610_001	AT4G24210.1	16709201
AT3G63010.1	GSMUA_Achr9P22610_001	AT4G24210.1	19500306
AT5G27320.1	GSMUA_Achr10P...	AT1G14920.1	16709201
AT5G27320.1	GSMUA_Achr1P21300_001	AT1G14920.1	16709201
AT5G27320.1	GSMUA_Achr8P18250_001	AT1G14920.1	16709201
AT5G27320.1	GSMUA_Achr10P...	AT1G14920.1	17194763
AT5G27320.1	GSMUA_Achr1P21300_001	AT1G14920.1	17194763
AT5G27320.1	GSMUA_Achr8P18250_001	AT1G14920.1	17194763
AT5G27320.1	GSMUA_Achr10P...	AT1G14920.1	18827182
AT5G27320.1	GSMUA_Achr1P21300_001	AT1G14920.1	18827182
AT5G27320.1	GSMUA_Achr8P18250_001	AT1G14920.1	18827182
AT5G27320.1	GSMUA_Achr10P...	AT1G14920.1	19500306
AT5G27320.1	GSMUA_Achr1P21300_001	AT1G14920.1	19500306
AT5G27320.1	GSMUA_Achr8P18250_001	AT1G14920.1	19500306
AT5G27320.1	GSMUA_Achr10P...	AT2G01570.1	16709201
AT5G27320.1	GSMUA_Achr1P21300_001	AT2G01570.1	16709201
AT5G27320.1	GSMUA_Achr8P18250_001	AT2G01570.1	16709201
AT5G27320.1	GSMUA_Achr10P...	AT2G01570.1	17194763
AT5G27320.1	GSMUA_Achr1P21300_001	AT2G01570.1	17194763
AT5G27320.1	GSMUA_Achr8P18250_001	AT2G01570.1	17194763
AT5G27320.1	GSMUA_Achr10P...	AT2G01570.1	19500306
AT5G27320.1	GSMUA_Achr1P21300_001	AT2G01570.1	19500306
AT5G27320.1	GSMUA_Achr8P18250_001	AT2G01570.1	19500306
AT5G27320.1	GSMUA_Achr9P22610_001	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27430_001	Banana	cytosol	90.53	99.35
GSMUA_Achr3P24930_001	Banana	cytosol	78.99	87.25
GSMUA_Achr8P05910_001	Banana	cytosol	76.33	84.59
GSMUA_Achr10P...	Banana	cytosol	76.63	83.55
GSMUA_Achr6P16090_001	Banana	cytosol	75.44	83.06
AT5G27320.1	Thale cress	cytosol	65.09	63.95
CDX80665	Canola	cytosol	63.61	62.5
VIT_07s0104g00930.t01	Wine grape	cytosol	63.31	62.21
Bra009970.1-P	Field mustard	cytosol	63.31	62.03
KRH33997	Soybean	cytosol	63.02	61.92
CDY16687	Canola	cytosol	63.02	61.74
Solyc06g008870.2.1	Tomato	cytosol	63.02	61.74
PGSC0003DMT400056562	Potato	cytosol	62.72	61.45
KRH71503	Soybean	cytosol	62.13	61.4
KRG92803	Soybean	cytosol	62.43	61.34
KRH31953	Soybean	cytosol	62.13	61.22
AT3G05120.1	Thale cress	cytosol	61.83	60.58
KXG21982	Sorghum	cytosol	63.61	60.56
Zm00001d038165_P003	Maize	cytosol	62.72	60.4
PGSC0003DMT400009831	Potato	cytosol	61.54	60.29
Solyc01g098390.2.1	Tomato	cytosol	61.83	59.89
PGSC0003DMT400073501	Potato	cytosol	61.54	59.77
Zm00001d010308_P001	Maize	cytosol, plastid	61.54	59.43
CDY41936	Canola	cytosol	60.95	59.37
TraesCS1D01G254500.1	Wheat	cytosol	62.13	59.32
CDY27795	Canola	cytosol	60.65	59.25
TraesCS1A01G255100.1	Wheat	cytosol	62.13	59.15
TraesCS1B01G265900.1	Wheat	cytosol	62.13	59.15
Solyc09g074270.2.1	Tomato	cytosol	60.35	59.13
HORVU1Hr1G060810.1	Barley	cytosol	61.54	58.76
Os05t0407500-01	Rice	cytosol, nucleus	60.35	57.63
CDY67478	Canola	cytosol	60.65	57.26
KRH67123	Soybean	cytosol	58.58	57.23
CDX89165	Canola	cytosol	60.95	57.22
VIT_14s0030g00440.t01	Wine grape	cytosol	63.61	57.03
CDY63333	Canola	cytosol	60.35	56.98
Bra040420.1-P	Field mustard	cytosol	60.35	56.67
AT3G63010.1	Thale cress	cytosol	59.47	56.15
Bra007722.1-P	Field mustard	cytosol	59.47	56.15
Bra003520.1-P	Field mustard	cytosol	59.17	55.87
CDX67913	Canola	cytosol	59.17	55.87
CDX93945	Canola	extracellular, golgi	58.28	55.34
CDY70667	Canola	cytosol	58.58	55.31
Bra039460.1-P	Field mustard	cytosol	61.54	52.53
GSMUA_Achr11P...	Banana	cytosol	32.84	36.27
GSMUA_Achr2P05600_001	Banana	plastid	29.88	32.17
GSMUA_Achr9P08260_001	Banana	plastid	21.3	31.86
GSMUA_Achr6P29020_001	Banana	mitochondrion	29.29	29.12
GSMUA_Achr6P29040_001	Banana	plastid	26.33	28.99
GSMUA_Achr2P01900_001	Banana	cytosol	26.33	28.62
GSMUA_Achr9P08270_001	Banana	cytosol, plastid	27.22	28.05
GSMUA_Achr8P05900_001	Banana	cytosol	22.49	27.84
GSMUA_Achr6P16980_001	Banana	mitochondrion	22.49	25.68
GSMUA_Achr10P...	Banana	cytosol	22.19	25.42
GSMUA_Achr4P04980_001	Banana	cytosol	23.67	24.77
GSMUA_Achr7P16460_001	Banana	cytosol	23.37	24.38
GSMUA_Achr6P32510_001	Banana	cytosol	20.71	24.22

Protein Annotations

Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G27450_001	EnsemblPlants:GSMUA_Achr5P27450_001	EnsemblPlants:GSMUA_Achr5T27450_001
InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS	InterPro:Lipase_GDXG_put_SER_AS	UniProt:M0T270	PFAM:PF07859	ScanProsite:PS01173
ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF227	SUPFAM:SSF53474	UniParc:UPI0002950019	SEG:seg

Description

Probable gibberellin receptor GID1L3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27450_001]

Coordinates

chr5:-:27974349..27977977

Molecular Weight (calculated)

37339.6 Da

IEP (calculated)

9.042

GRAVY (calculated)

-0.096

Length

338 amino acids

Sequence
(BLAST)

001: MAVHSGRSCR GREGRLIWTR AVKSAVLGFT MAGSNEVNAN ESKMAVPLNT WVLISNFKLA YNMLRRPDGT FDRHLAEFLD RKVPANATPV NGVISFDVLI
101: GRTSKLLSRI YRPAPSTSAA VPLLADLYQP PSADPFPVII FFHGGSFAHS SSNSAIYDSL CRRFVSLCGA VVVSVNYRRS PEYKYPCAYD DGWAALKWAS
201: AEPWLQSGKD AKFRVFLAGD SSGGNIAHHV AVRAAEDWYW KAYLPEGADR DHPACNPFGP NAAKLDGLPF TKSLIIVAGL DLVQDWQLAY AEGLKKAGHS
301: VKLVYREQAT IGFYLLPNTD HFYQVMDEIK NFVMANVQ

Best Arabidopsis Sequence Match ( AT5G27320.1 )
(BLAST)

001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ

Arabidopsis Description

GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.