Factsheet for Solyc06g008870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078390.1.1
Solyc11g011260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63010.1	Solyc11g011260.1.1	AT1G66350.1	16709201
AT3G63010.1	Solyc11g011260.1.1	AT1G66350.1	19500306
AT3G63010.1	Solyc11g011260.1.1	AT3G03450.1	16709201
AT3G63010.1	Solyc11g011260.1.1	AT3G03450.1	19500306
AT3G63010.1	Solyc04g078390.1.1	AT4G24210.1	16709201
AT3G63010.1	Solyc04g078390.1.1	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056562	Potato	cytosol	99.71	99.71
Solyc09g074270.2.1	Tomato	cytosol	86.38	86.38
VIT_07s0104g00930.t01	Wine grape	cytosol	83.48	83.72
KRH71503	Soybean	cytosol	79.13	79.82
KRH31953	Soybean	cytosol	77.68	78.13
AT3G63010.1	Thale cress	cytosol	78.84	75.98
CDY67478	Canola	cytosol	78.55	75.7
CDY63333	Canola	cytosol	78.26	75.42
KRH67123	Soybean	cytosol	75.07	74.86
CDX89165	Canola	cytosol	77.97	74.72
Bra040420.1-P	Field mustard	cytosol	77.97	74.72
Bra007722.1-P	Field mustard	cytosol	77.1	74.3
CDY70667	Canola	cytosol	75.94	73.18
CDX67913	Canola	cytosol	75.94	73.18
Bra003520.1-P	Field mustard	cytosol	75.94	73.18
CDX93945	Canola	extracellular, golgi	75.36	73.03
Solyc01g098390.2.1	Tomato	cytosol	71.88	71.06
GSMUA_Achr3P24930_001	Banana	cytosol	61.74	69.61
GSMUA_Achr5P27430_001	Banana	cytosol	62.03	69.48
GSMUA_Achr8P05910_001	Banana	cytosol	61.16	69.18
GSMUA_Achr10P...	Banana	cytosol	60.87	67.74
GSMUA_Achr6P16090_001	Banana	cytosol	59.71	67.1
GSMUA_Achr5P27450_001	Banana	mitochondrion	61.74	63.02
Os05t0407500-01	Rice	cytosol, nucleus	62.32	60.73
TraesCS1B01G265900.1	Wheat	cytosol	62.03	60.28
HORVU1Hr1G060810.1	Barley	cytosol	61.74	60.17
Zm00001d010308_P001	Maize	cytosol, plastid	60.87	60.0
TraesCS1A01G255100.1	Wheat	cytosol	61.74	60.0
TraesCS1D01G254500.1	Wheat	cytosol	61.45	59.89
Zm00001d038165_P003	Maize	cytosol	60.58	59.54
KXG21982	Sorghum	cytosol	61.16	59.44
Solyc10g054780.1.1	Tomato	nucleus	37.39	37.28
Solyc11g071720.1.1	Tomato	cytosol, extracellular	29.57	31.68
Solyc02g069800.1.1	Tomato	extracellular	28.99	29.85
Solyc11g045460.1.1	Tomato	cytosol	20.87	29.15
Solyc05g009610.1.1	Tomato	cytosol	28.99	28.99
Solyc02g085800.1.1	Tomato	cytosol	28.7	28.86
Solyc01g094010.2.1	Tomato	cytosol	26.67	27.14
Solyc08g060930.2.1	Tomato	cytosol	12.46	27.04
Solyc06g035520.2.1	Tomato	extracellular	25.51	26.99
Solyc07g040890.1.1	Tomato	cytosol, extracellular	25.8	26.81
Solyc01g091410.2.1	Tomato	cytosol, unclear	23.48	25.31
Solyc01g098140.2.1	Tomato	cytosol	28.12	14.97

Protein Annotations

MapMan:11.6.2.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005975	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719
GO:GO:0009791	GO:GO:0009908	GO:GO:0009939	GO:GO:0009987	GO:GO:0010325	GO:GO:0010331
GO:GO:0016787	GO:GO:0048444	InterPro:IPR029058	UniProt:K4C3R7	InterPro:Lipase_GDXG_HIS_AS	InterPro:Lipase_GDXG_put_SER_AS
PFAM:PF07859	ScanProsite:PS01173	ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF98	MEROPS:S09.A10
SUPFAM:SSF53474	EnsemblPlantsGene:Solyc06g008870.2	EnsemblPlants:Solyc06g008870.2.1	UniParc:UPI0002766AF7	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:2812790..2815929

Molecular Weight (calculated)

39170.4 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.354

Length

345 amino acids

Sequence
(BLAST)

001: MAGSNEINAN ESKRVVPLNT WILISNFKLS YNMLRRPDGT FDRDLAEFID RKVPTNSIPV DGVYSFDVFD RVTSLLNRIY RPAPENEADW GKIELEKPLS
101: TTEIVPVIIY FHGGSFTHSS ANSAIYDTFC RRLVKICKAV VVSVNYRRSP EHRYPCAYDD GWAALKWVKS RTWLQSGKDS KVHVYMAGDS SGGNIAHHVA
201: VRAAEAGVEV LGNIHLHPMF GGQNRTESEK RLDGKYFVTV QDRDWYWRAY LPEGEDRDHP ACNIFGSRSR SLKGLKFPKS LVVVAGLDLS QDWQLAYVDG
301: LKNSGHEVNL LYLKQATIGF YFLPNNDHFP CLMEEITNFI HPNCS

Best Arabidopsis Sequence Match ( AT3G63010.1 )
(BLAST)

001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP

Arabidopsis Description

GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.