Factsheet for Solyc10g054780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0130g00320.t01	Wine grape	plastid	61.56	63.58
VIT_07s0130g00340.t01	Wine grape	plastid	60.69	62.69
KRH38783	Soybean	plastid	58.38	59.94
KRH09281	Soybean	plastid	58.09	59.47
KRH09280	Soybean	plastid	58.09	59.47
CDX88032	Canola	cytosol	56.94	58.81
AT5G23530.1	Thale cress	cytosol	56.94	58.81
Bra009691.1-P	Field mustard	cytosol	56.65	58.51
CDX80370	Canola	cytosol	56.65	58.51
CDX87169	Canola	cytosol	55.49	57.31
Bra026494.1-P	Field mustard	cytosol	55.2	57.01
CDY16855	Canola	cytosol	55.2	57.01
KRH09282	Soybean	extracellular	54.05	56.5
GSMUA_Achr9P08260_001	Banana	plastid	36.42	55.75
GSMUA_Achr2P05600_001	Banana	plastid	47.98	52.87
KRH38784	Soybean	plastid	53.76	51.52
TraesCS4A01G225700.1	Wheat	mitochondrion	47.98	48.68
HORVU4Hr1G015550.1	Barley	mitochondrion	47.69	48.39
TraesCS4B01G090600.1	Wheat	mitochondrion	47.69	48.39
TraesCS4D01G087700.1	Wheat	mitochondrion	47.4	48.09
Zm00001d007257_P001	Maize	plastid	47.98	47.98
TraesCS4A01G224900.1	Wheat	cytosol	46.82	47.23
EES08278	Sorghum	plastid	47.69	47.14
EES08277	Sorghum	plastid	48.27	46.78
Os11t0240600-01	Rice	plasma membrane	47.4	46.72
TraesCS4B01G091200.1	Wheat	cytosol	46.53	46.67
GSMUA_Achr9P08270_001	Banana	cytosol, plastid	44.22	46.65
TraesCS4D01G088300.1	Wheat	cytosol	46.24	46.38
Zm00001d007258_P001	Maize	mitochondrion	47.11	46.18
GSMUA_Achr6P29040_001	Banana	plastid	39.88	44.95
TraesCS4A01G225000.1	Wheat	cytosol	37.28	42.86
Os11t0239500-01	Rice	plasma membrane	45.09	42.51
GSMUA_Achr6P29020_001	Banana	mitochondrion	41.62	42.35
EER97518	Sorghum	plastid	41.91	42.03
HORVU4Hr1G015560.1	Barley	plastid	47.11	41.48
TraesCS2D01G180600.1	Wheat	plastid	41.33	41.09
TraesCS2B01G199700.1	Wheat	plastid	40.75	40.52
TraesCS2A01G173400.1	Wheat	plastid	40.75	40.4
Os07t0606800-01	Rice	plastid	41.91	39.51
Zm00001d022101_P001	Maize	cytosol	34.97	39.16
Solyc09g074270.2.1	Tomato	cytosol	37.28	37.39
Solyc06g008870.2.1	Tomato	cytosol	37.28	37.39
Solyc01g098390.2.1	Tomato	cytosol	36.71	36.39
HORVU2Hr1G032290.4	Barley	plastid	28.03	31.6
Solyc11g071720.1.1	Tomato	cytosol, extracellular	29.19	31.37
Solyc07g040890.1.1	Tomato	cytosol, extracellular	30.06	31.33
Solyc06g035520.2.1	Tomato	extracellular	29.19	30.98
Solyc02g069800.1.1	Tomato	extracellular	29.48	30.45
Solyc01g094010.2.1	Tomato	cytosol	29.48	30.09
Solyc01g091410.2.1	Tomato	cytosol, unclear	27.75	30.0
Solyc02g085800.1.1	Tomato	cytosol	28.32	28.57
Solyc05g009610.1.1	Tomato	cytosol	28.32	28.41
Solyc11g045460.1.1	Tomato	cytosol	20.23	28.34
Solyc08g060930.2.1	Tomato	cytosol	12.14	26.42
Solyc01g098140.2.1	Tomato	cytosol	29.19	15.59

Protein Annotations

Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009856
GO:GO:0009860	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016787	GO:GO:0030154
GO:GO:0040007	GO:GO:0052689	InterPro:IPR029058	UniProt:K4D171	PFAM:PF07859	PANTHER:PTHR23024
PANTHER:PTHR23024:SF331	MEROPS:S09.A10	SUPFAM:SSF53474	EnsemblPlantsGene:Solyc10g054780.1	EnsemblPlants:Solyc10g054780.1.1	UniParc:UPI000276930B

Description

Probable carboxylesterase 18 [Source:Projected from Arabidopsis thaliana (AT5G23530) UniProtKB/Swiss-Prot;Acc:Q9LT10]

Coordinates

chr10:-:55940736..55944113

Molecular Weight (calculated)

39040.6 Da

IEP (calculated)

8.966

GRAVY (calculated)

-0.295

Length

346 amino acids

Sequence
(BLAST)

001: MAQKEKKSSP GIPWRTRIAL SFVSTVTDYS RRQNGTVNRR LLGIFGLKTS ANPNPVNGVK SYDVTVDSSR DLWFRLFIPT TDESRNLSSL PIIVFFHGGG
101: FVYLSPDTKA YDAVCRRFAR KTPAVVVSVN YRLAPEHKYP AQYDDGFDVL KFLDNEKSRE LLPENVDLSR CFLAGDSAGG NLAHHVAKRA SEMTSNFGAL
201: KVIGLVAIQP FFGGEERTES ELKLVDVDPL ISVRKTDWMW NAFIPPGEGM DRDHEVINVS GPRAVDISKL DKFPATVVVV GGFDPLKDWQ RRYYEWLKRS
301: GKDVHLSEYP TMVHAFYIFP EVPEATQLIL EVKDFINKQC SKVVKN

Best Arabidopsis Sequence Match ( AT5G23530.1 )
(BLAST)

001: MATDSQPNQK LTLPLKTRIA LTVISTMTDN AQRPDGTINR RFLRLFDFRA PPNPKPVNIV STSDFVVDQS RDLWFRLYTP HVSGDKIPVV VFFHGGGFAF
101: LSPNAYPYDN VCRRFARKLP AYVISVNYRL APEHRYPAQY DDGFDALKYI EENHGSILPA NADLSRCFFA GDSAGGNIAH NVAIRICREP RSSFTAVKLI
201: GLISIQPFFG GEERTEAEKQ LVGAPLVSPD RTDWCWKAMG LNRDHEAVNV GGPNAVDISG LDYPETMVVV AGFDPLKDWQ RSYYEWLKLC GKKATLIEYP
301: NMFHAFYIFP ELPEAGQLIM RIKDFVDERV ASLSA

Arabidopsis Description

CXE18Probable carboxylesterase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.