Factsheet for Solyc01g098390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078390.1.1
Solyc11g011260.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05120.1	Solyc11g011260.1.1	AT1G66350.1	16709201
AT3G05120.1	Solyc11g011260.1.1	AT1G66350.1	19500306
AT3G05120.1	Solyc11g011260.1.1	AT3G03450.1	16709201
AT3G05120.1	Solyc11g011260.1.1	AT3G03450.1	19500306
AT3G05120.1	Solyc04g078390.1.1	AT4G24210.1	16709201
AT3G05120.1	Solyc04g078390.1.1	AT4G24210.1	19500306
AT5G27320.1	Solyc11g011260.1.1	AT1G66350.1	16709201
AT5G27320.1	Solyc11g011260.1.1	AT1G66350.1	19500306
AT5G27320.1	Solyc11g011260.1.1	AT3G03450.1	16709201
AT5G27320.1	Solyc11g011260.1.1	AT3G03450.1	19500306
AT5G27320.1	Solyc04g078390.1.1	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073501	Potato	cytosol	97.13	97.41
KRH33997	Soybean	cytosol	77.65	78.78
AT5G27320.1	Thale cress	cytosol	76.79	77.91
KRG92803	Soybean	cytosol	75.64	76.74
AT3G05120.1	Thale cress	cytosol	75.64	76.52
Bra009970.1-P	Field mustard	cytosol	75.36	76.23
CDY16687	Canola	cytosol	75.36	76.23
CDX80665	Canola	cytosol	75.07	76.16
VIT_14s0030g00440.t01	Wine grape	cytosol	81.38	75.33
CDY41936	Canola	cytosol	71.92	72.33
CDY27795	Canola	cytosol	71.63	72.25
Solyc06g008870.2.1	Tomato	cytosol	71.06	71.88
Solyc09g074270.2.1	Tomato	cytosol	69.05	69.86
GSMUA_Achr3P24930_001	Banana	cytosol	60.74	69.28
GSMUA_Achr8P05910_001	Banana	cytosol	59.6	68.2
GSMUA_Achr5P27430_001	Banana	cytosol	60.17	68.18
GSMUA_Achr6P16090_001	Banana	cytosol	57.59	65.47
GSMUA_Achr10P...	Banana	cytosol	57.88	65.16
Bra039460.1-P	Field mustard	cytosol	71.63	63.13
GSMUA_Achr5P27450_001	Banana	mitochondrion	59.89	61.83
Os05t0407500-01	Rice	cytosol, nucleus	61.03	60.17
TraesCS1B01G265900.1	Wheat	cytosol	61.03	60.0
Zm00001d010308_P001	Maize	cytosol, plastid	59.89	59.71
HORVU1Hr1G060810.1	Barley	cytosol	60.46	59.6
TraesCS1A01G255100.1	Wheat	cytosol	60.17	59.15
TraesCS1D01G254500.1	Wheat	cytosol	59.89	59.04
KXG21982	Sorghum	cytosol	59.6	58.59
Zm00001d038165_P003	Maize	cytosol	58.74	58.4
Solyc10g054780.1.1	Tomato	nucleus	36.39	36.71
Solyc11g071720.1.1	Tomato	cytosol, extracellular	27.79	30.12
Solyc02g069800.1.1	Tomato	extracellular	27.22	28.36
Solyc11g045460.1.1	Tomato	cytosol	20.06	28.34
Solyc01g094010.2.1	Tomato	cytosol	27.51	28.32
Solyc05g009610.1.1	Tomato	cytosol	27.79	28.12
Solyc01g091410.2.1	Tomato	cytosol, unclear	25.5	27.81
Solyc08g060930.2.1	Tomato	cytosol	12.61	27.67
Solyc02g085800.1.1	Tomato	cytosol	26.93	27.41
Solyc06g035520.2.1	Tomato	extracellular	25.21	26.99
Solyc07g040890.1.1	Tomato	cytosol, extracellular	25.5	26.81
Solyc01g098140.2.1	Tomato	cytosol	28.08	15.12

Protein Annotations

MapMan:11.6.2.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005975	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719
GO:GO:0009791	GO:GO:0009908	GO:GO:0009939	GO:GO:0009987	GO:GO:0010325	GO:GO:0010331
GO:GO:0016787	GO:GO:0048444	InterPro:IPR029058	UniProt:K4B0M6	InterPro:Lipase_GDXG_HIS_AS	InterPro:Lipase_GDXG_put_SER_AS
PFAM:PF07859	ScanProsite:PS01173	ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF227	MEROPS:S09.A10
SUPFAM:SSF53474	EnsemblPlantsGene:Solyc01g098390.2	EnsemblPlants:Solyc01g098390.2.1	UniParc:UPI00027685DF	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:88916948..88919326

Molecular Weight (calculated)

39410.6 Da

IEP (calculated)

6.408

GRAVY (calculated)

-0.290

Length

349 amino acids

Sequence
(BLAST)

001: MARNNEAVAN ESKSESKRVV PLNTWILISN FKLSYNLLRR PDGTFNRHLA EFLDRKVPAN ANPVDGVFSF DVLIDREIGL LSRVYRPSFE DGASPNMAEL
101: EKPVTADVVP VIIFFHGGSF AHSSFNSAIY DTLCRRLVGI CKAVVVSVNY RRAPENRYPC AYNDGWTVLE WVNSREWLRS KKDSKAHIYL AGDSSGGNIV
201: HNVAFRAVES NIEVLGNILL NPMFGGQERT ESEKRLDGKY FVTLQDRDWY WRAYLPEDSD RDHPACNPFG PNGINLKGVK FPKNLVVVAG LDLVQDWQLA
301: YADGLKKAGQ EVNLIYLEKA TIGFYLLPNN EHFYTVMDEI SSFVSSDSQ

Best Arabidopsis Sequence Match ( AT5G27320.1 )
(BLAST)

001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ

Arabidopsis Description

GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.