Factsheet for GSMUA_Achr6P16090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21300_001
GSMUA_Achr8P18250_001
GSMUA_Achr9P22610_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	16709201
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	16709201
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	16709201
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	17194763
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	17194763
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	17194763
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	17416730
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	17416730
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	17416730
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	18827182
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	18827182
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	18827182
AT3G05120.1	GSMUA_Achr10P...	AT1G14920.1	19500306
AT3G05120.1	GSMUA_Achr1P21300_001	AT1G14920.1	19500306
AT3G05120.1	GSMUA_Achr8P18250_001	AT1G14920.1	19500306
AT3G05120.1	GSMUA_Achr10P...	AT2G01570.1	16709201
AT3G05120.1	GSMUA_Achr1P21300_001	AT2G01570.1	16709201
AT3G05120.1	GSMUA_Achr8P18250_001	AT2G01570.1	16709201
AT3G05120.1	GSMUA_Achr10P...	AT2G01570.1	17194763
AT3G05120.1	GSMUA_Achr1P21300_001	AT2G01570.1	17194763
AT3G05120.1	GSMUA_Achr8P18250_001	AT2G01570.1	17194763
AT3G05120.1	GSMUA_Achr10P...	AT2G01570.1	17416730
AT3G05120.1	GSMUA_Achr1P21300_001	AT2G01570.1	17416730
AT3G05120.1	GSMUA_Achr8P18250_001	AT2G01570.1	17416730
AT3G05120.1	GSMUA_Achr10P...	AT2G01570.1	19500306
AT3G05120.1	GSMUA_Achr1P21300_001	AT2G01570.1	19500306
AT3G05120.1	GSMUA_Achr8P18250_001	AT2G01570.1	19500306
AT3G05120.1	GSMUA_Achr9P22610_001	AT4G24210.1	16709201
AT3G05120.1	GSMUA_Achr9P22610_001	AT4G24210.1	19500306
AT3G63010.1	GSMUA_Achr10P...	AT1G14920.1	16709201
AT3G63010.1	GSMUA_Achr1P21300_001	AT1G14920.1	16709201
AT3G63010.1	GSMUA_Achr8P18250_001	AT1G14920.1	16709201
AT3G63010.1	GSMUA_Achr10P...	AT1G14920.1	17194763
AT3G63010.1	GSMUA_Achr1P21300_001	AT1G14920.1	17194763
AT3G63010.1	GSMUA_Achr8P18250_001	AT1G14920.1	17194763
AT3G63010.1	GSMUA_Achr10P...	AT1G14920.1	18827182
AT3G63010.1	GSMUA_Achr1P21300_001	AT1G14920.1	18827182
AT3G63010.1	GSMUA_Achr8P18250_001	AT1G14920.1	18827182
AT3G63010.1	GSMUA_Achr10P...	AT1G14920.1	19500306
AT3G63010.1	GSMUA_Achr1P21300_001	AT1G14920.1	19500306
AT3G63010.1	GSMUA_Achr8P18250_001	AT1G14920.1	19500306
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	16709201
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	16709201
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	16709201
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	17194763
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	17194763
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	17194763
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	18827182
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	18827182
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	18827182
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	19429606
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	19429606
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	19429606
AT3G63010.1	GSMUA_Achr10P...	AT2G01570.1	19500306
AT3G63010.1	GSMUA_Achr1P21300_001	AT2G01570.1	19500306
AT3G63010.1	GSMUA_Achr8P18250_001	AT2G01570.1	19500306
AT3G63010.1	GSMUA_Achr9P22610_001	AT4G24210.1	16709201
AT3G63010.1	GSMUA_Achr9P22610_001	AT4G24210.1	19500306
AT5G27320.1	GSMUA_Achr10P...	AT1G14920.1	16709201
AT5G27320.1	GSMUA_Achr1P21300_001	AT1G14920.1	16709201
AT5G27320.1	GSMUA_Achr8P18250_001	AT1G14920.1	16709201
AT5G27320.1	GSMUA_Achr10P...	AT1G14920.1	17194763
AT5G27320.1	GSMUA_Achr1P21300_001	AT1G14920.1	17194763
AT5G27320.1	GSMUA_Achr8P18250_001	AT1G14920.1	17194763
AT5G27320.1	GSMUA_Achr10P...	AT1G14920.1	18827182
AT5G27320.1	GSMUA_Achr1P21300_001	AT1G14920.1	18827182
AT5G27320.1	GSMUA_Achr8P18250_001	AT1G14920.1	18827182
AT5G27320.1	GSMUA_Achr10P...	AT1G14920.1	19500306
AT5G27320.1	GSMUA_Achr1P21300_001	AT1G14920.1	19500306
AT5G27320.1	GSMUA_Achr8P18250_001	AT1G14920.1	19500306
AT5G27320.1	GSMUA_Achr10P...	AT2G01570.1	16709201
AT5G27320.1	GSMUA_Achr1P21300_001	AT2G01570.1	16709201
AT5G27320.1	GSMUA_Achr8P18250_001	AT2G01570.1	16709201
AT5G27320.1	GSMUA_Achr10P...	AT2G01570.1	17194763
AT5G27320.1	GSMUA_Achr1P21300_001	AT2G01570.1	17194763
AT5G27320.1	GSMUA_Achr8P18250_001	AT2G01570.1	17194763
AT5G27320.1	GSMUA_Achr10P...	AT2G01570.1	19500306
AT5G27320.1	GSMUA_Achr1P21300_001	AT2G01570.1	19500306
AT5G27320.1	GSMUA_Achr8P18250_001	AT2G01570.1	19500306
AT5G27320.1	GSMUA_Achr9P22610_001	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	92.83	91.94
GSMUA_Achr3P24930_001	Banana	cytosol	86.97	87.25
GSMUA_Achr5P27430_001	Banana	cytosol	83.39	83.12
GSMUA_Achr8P05910_001	Banana	cytosol	82.41	82.95
GSMUA_Achr5P27450_001	Banana	mitochondrion	83.06	75.44
VIT_07s0104g00930.t01	Wine grape	cytosol	69.38	61.92
AT5G27320.1	Thale cress	cytosol	68.73	61.34
KRH33997	Soybean	cytosol	68.08	60.76
CDX80665	Canola	cytosol	68.08	60.76
Bra009970.1-P	Field mustard	cytosol	67.75	60.29
KRH71503	Soybean	cytosol	67.1	60.23
KRG92803	Soybean	cytosol	67.43	60.17
CDY16687	Canola	cytosol	67.43	60.0
KRH31953	Soybean	cytosol	66.78	59.77
KXG21982	Sorghum	cytosol	69.06	59.72
Solyc06g008870.2.1	Tomato	cytosol	67.1	59.71
Zm00001d038165_P003	Maize	cytosol	68.08	59.54
PGSC0003DMT400056562	Potato	cytosol	66.78	59.42
TraesCS1D01G254500.1	Wheat	cytosol	68.4	59.32
TraesCS1B01G265900.1	Wheat	cytosol	68.4	59.15
TraesCS1A01G255100.1	Wheat	cytosol	68.4	59.15
PGSC0003DMT400009831	Potato	cytosol	66.45	59.13
Zm00001d010308_P001	Maize	cytosol, plastid	67.1	58.86
AT3G05120.1	Thale cress	cytosol	66.12	58.84
HORVU1Hr1G060810.1	Barley	cytosol	67.43	58.47
CDX89165	Canola	cytosol	67.75	57.78
Solyc09g074270.2.1	Tomato	cytosol	64.82	57.68
Solyc01g098390.2.1	Tomato	cytosol	65.47	57.59
PGSC0003DMT400073501	Potato	cytosol	65.15	57.47
CDY67478	Canola	cytosol	66.78	57.26
CDY63333	Canola	cytosol	66.78	57.26
Bra040420.1-P	Field mustard	cytosol	67.1	57.22
Os05t0407500-01	Rice	cytosol, nucleus	65.8	57.06
Bra003520.1-P	Field mustard	cytosol	66.45	56.98
CDX67913	Canola	cytosol	66.45	56.98
Bra007722.1-P	Field mustard	cytosol	66.12	56.7
KRH67123	Soybean	cytosol	63.84	56.65
AT3G63010.1	Thale cress	cytosol	65.8	56.42
CDY70667	Canola	cytosol	65.8	56.42
CDY27795	Canola	cytosol	62.87	55.78
CDY41936	Canola	cytosol	62.87	55.62
CDX93945	Canola	extracellular, golgi	64.17	55.34
VIT_14s0030g00440.t01	Wine grape	cytosol	67.43	54.91
Bra039460.1-P	Field mustard	cytosol	62.87	48.74
GSMUA_Achr11P...	Banana	cytosol	35.5	35.62
GSMUA_Achr2P05600_001	Banana	plastid	32.25	31.53
GSMUA_Achr9P08260_001	Banana	plastid	22.48	30.53
GSMUA_Achr2P01900_001	Banana	cytosol	30.29	29.9
GSMUA_Achr6P29040_001	Banana	plastid	28.99	28.99
GSMUA_Achr6P29020_001	Banana	mitochondrion	31.92	28.82
GSMUA_Achr9P08270_001	Banana	cytosol, plastid	30.29	28.35
GSMUA_Achr8P05900_001	Banana	cytosol	25.08	28.21
GSMUA_Achr6P16980_001	Banana	mitochondrion	25.73	26.69
GSMUA_Achr10P...	Banana	cytosol	25.08	26.1
GSMUA_Achr6P32510_001	Banana	cytosol	24.1	25.61
GSMUA_Achr7P16460_001	Banana	cytosol	26.06	24.69
GSMUA_Achr4P04980_001	Banana	cytosol	25.73	24.46

Protein Annotations

EnsemblPlants:GSMUA_Achr6P16090_001	EnsemblPlants:GSMUA_Achr6T16090_001	EnsemblPlantsGene:GSMUA_Achr6G16090_001	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
InterPro:Lipase_GDXG_HIS_AS	PANTHER:PTHR23024	PANTHER:PTHR23024:SF227	PFAM:PF07859	ScanProsite:PS01173	SEG:seg
SUPFAM:SSF53474	UniParc:UPI00029640E4	UniProt:M0T7F7	MapMan:35.1	:	:

Description

Probable gibberellin receptor GID1L3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16090_001]

Coordinates

chr6:+:10735491..10737551

Molecular Weight (calculated)

33974.3 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.145

Length

307 amino acids

Sequence
(BLAST)

001: MAGSNEVNAN ECRMVVPLNT WVLISNFKLA YNMLRRPDGT FDRHLAEFLD RKVPANAAPV NGVVSFDILI DRTNNLLARI YRPAPPNPSP ATTPLADFHR
101: PPSPDPFPVI IFFHGGSFAH SSPNTAIYDS LCRRFVSLCG AVVISVDYRR SPEYRYPCAY DDGWAALKWA STEPWLHGGK DAKLRVFLCG DSSGGNIAHH
201: VAVRAAESGI EAYLPEGADR DHPACNPFGP NGVPLEELPF TKSLVIVAGL DLVQDWQLAY ADGLKTAGKD VKLVYREQAT IGFYLLPNTD HFYEVMEEIK
301: HFVTSNL

Best Arabidopsis Sequence Match ( AT3G63010.1 )
(BLAST)

001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP

Arabidopsis Description

GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.