Factsheet for PGSC0003DMT400009831

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008560
PGSC0003DMT400040589

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63010.1	PGSC0003DMT400040589	AT1G66350.1	16709201
AT3G63010.1	PGSC0003DMT400040589	AT1G66350.1	19500306
AT3G63010.1	PGSC0003DMT400040589	AT3G03450.1	16709201
AT3G63010.1	PGSC0003DMT400040589	AT3G03450.1	19500306
AT3G63010.1	PGSC0003DMT400008560	AT4G24210.1	16709201
AT3G63010.1	PGSC0003DMT400008560	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074270.2.1	Tomato	cytosol	95.07	95.07
PGSC0003DMT400056562	Potato	cytosol	87.54	87.54
VIT_07s0104g00930.t01	Wine grape	cytosol	82.9	83.14
KRH71503	Soybean	cytosol	78.55	79.24
KRH31953	Soybean	cytosol	77.39	77.84
CDY67478	Canola	cytosol	78.84	75.98
CDY63333	Canola	cytosol	78.26	75.42
AT3G63010.1	Thale cress	cytosol	77.39	74.58
CDX89165	Canola	cytosol	77.39	74.17
KRH67123	Soybean	cytosol	74.2	73.99
Bra040420.1-P	Field mustard	cytosol	76.81	73.61
Bra007722.1-P	Field mustard	cytosol	76.23	73.46
CDX67913	Canola	cytosol	76.23	73.46
CDX93945	Canola	extracellular, golgi	75.65	73.31
Bra003520.1-P	Field mustard	cytosol	75.94	73.18
CDY70667	Canola	cytosol	75.94	73.18
PGSC0003DMT400073501	Potato	cytosol	70.72	70.11
GSMUA_Achr3P24930_001	Banana	cytosol	61.16	68.95
GSMUA_Achr8P05910_001	Banana	cytosol	60.29	68.2
GSMUA_Achr10P...	Banana	cytosol	60.87	67.74
GSMUA_Achr5P27430_001	Banana	cytosol	60.0	67.21
GSMUA_Achr6P16090_001	Banana	cytosol	59.13	66.45
GSMUA_Achr5P27450_001	Banana	mitochondrion	60.29	61.54
Os05t0407500-01	Rice	cytosol, nucleus	60.58	59.04
Zm00001d038165_P003	Maize	cytosol	60.0	58.97
KXG21982	Sorghum	cytosol	60.58	58.87
Zm00001d010308_P001	Maize	cytosol, plastid	59.71	58.86
TraesCS1B01G265900.1	Wheat	cytosol	60.29	58.59
TraesCS1A01G255100.1	Wheat	cytosol	60.29	58.59
HORVU1Hr1G060810.1	Barley	cytosol	60.0	58.47
TraesCS1D01G254500.1	Wheat	cytosol	59.71	58.19
PGSC0003DMT400007788	Potato	cytosol	30.14	32.3
PGSC0003DMT400040972	Potato	cytosol	28.12	31.09
PGSC0003DMT400022327	Potato	cytosol	22.03	30.77
PGSC0003DMT400033010	Potato	cytosol	28.41	29.61
PGSC0003DMT400033749	Potato	cytosol	29.57	29.48
PGSC0003DMT400054431	Potato	cytosol	28.41	29.25
PGSC0003DMT400033220	Potato	cytosol	25.22	27.19
PGSC0003DMT400017198	Potato	cytosol	25.51	27.16
PGSC0003DMT400057917	Potato	cytosol	25.51	26.83
PGSC0003DMT400048357	Potato	cytosol	25.22	26.61
PGSC0003DMT400000390	Potato	cytosol	25.8	26.25
PGSC0003DMT400017199	Potato	mitochondrion	25.22	26.2
PGSC0003DMT400057919	Potato	cytosol	24.64	25.99
PGSC0003DMT400071863	Potato	cytosol	24.35	25.77
PGSC0003DMT400050566	Potato	cytosol	24.06	25.46

Protein Annotations

EntrezGene:102579350	MapMan:11.6.2.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS
InterPro:Lipase_GDXG_put_SER_AS	UniProt:M0ZX00	PFAM:PF07859	EnsemblPlantsGene:PGSC0003DMG400003849	PGSC:PGSC0003DMG400003849	EnsemblPlants:PGSC0003DMT400009831
ScanProsite:PS01173	ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF98	MEROPS:S09.A13	SUPFAM:SSF53474
UniParc:UPI0002954210	RefSeq:XP_006358445.1	:	:	:	:

Description

GID1-like gibberellin receptor [Source:PGSC_GENE;Acc:PGSC0003DMG400003849]

Coordinates

chr9:-:51440682..51443078

Molecular Weight (calculated)

39217.5 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.330

Length

345 amino acids

Sequence
(BLAST)

001: MVDTKEINTN ESKRVVPLNT WILISNFKLA YNMLRRSDGT FNRDLAEFLE RKVPANSIPV DGVYSFDVVD RSTSLLNRVY KPAPKNESDW GKIDLDKPLS
101: TTEIVPVIIF FHGGSFTHSS ANSAIYDTFC RRLVSICKAV VVSVNYRRSP ENRYPCAYDD GWAALKWVKS RQWLQSGKDL KVHVYMAGDS SGGNIAHHVA
201: VQAAESGVEV FGNILLHPMF GGQKRTESES RLDGKYFVTV QDRDWYWRAY LPEGEDRDHP ACNIFGPRGR TLEGLNFPKS LVVVAGLDLV QDWQLTYVEG
301: LQKSGHEVNL LYLKQATIGF YFLPNNDHFR CLMEEITSFI HPNHS

Best Arabidopsis Sequence Match ( AT3G63010.1 )
(BLAST)

001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP

Arabidopsis Description

GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.