Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040420.1-P | Field mustard | cytosol | 99.44 | 99.44 |
| CDX67913 | Canola | cytosol | 93.61 | 94.13 |
| CDY70667 | Canola | cytosol | 92.78 | 93.3 |
| CDY63333 | Canola | cytosol | 92.78 | 93.3 |
| CDY67478 | Canola | cytosol | 92.5 | 93.02 |
| CDX93945 | Canola | extracellular, golgi | 90.83 | 91.85 |
| AT3G63010.1 | Thale cress | cytosol | 91.11 | 91.62 |
| VIT_07s0104g00930.t01 | Wine grape | cytosol | 75.83 | 79.36 |
| Solyc06g008870.2.1 | Tomato | cytosol | 74.72 | 77.97 |
| PGSC0003DMT400056562 | Potato | cytosol | 74.44 | 77.68 |
| PGSC0003DMT400009831 | Potato | cytosol | 74.17 | 77.39 |
| Solyc09g074270.2.1 | Tomato | cytosol | 72.22 | 75.36 |
| KRH71503 | Soybean | cytosol | 71.11 | 74.85 |
| KRH31953 | Soybean | cytosol | 69.72 | 73.18 |
| KRH67123 | Soybean | cytosol | 68.89 | 71.68 |
| CDX80665 | Canola | cytosol | 68.33 | 71.51 |
| CDY16687 | Canola | cytosol | 68.33 | 71.3 |
| GSMUA_Achr3P24930_001 | Banana | cytosol | 58.06 | 68.3 |
| GSMUA_Achr6P16090_001 | Banana | cytosol | 57.78 | 67.75 |
| CDY41936 | Canola | cytosol | 65.0 | 67.44 |
| CDY27795 | Canola | cytosol | 64.72 | 67.34 |
| GSMUA_Achr8P05910_001 | Banana | cytosol | 56.67 | 66.89 |
| GSMUA_Achr5P27430_001 | Banana | cytosol | 57.22 | 66.88 |
| GSMUA_Achr10P... | Banana | cytosol | 56.67 | 65.81 |
| GSMUA_Achr5P27450_001 | Banana | mitochondrion | 57.22 | 60.95 |
| Os05t0407500-01 | Rice | cytosol, nucleus | 58.61 | 59.6 |
| Zm00001d010308_P001 | Maize | cytosol, plastid | 56.94 | 58.57 |
| TraesCS1A01G255100.1 | Wheat | cytosol | 57.5 | 58.31 |
| TraesCS1B01G265900.1 | Wheat | cytosol | 57.5 | 58.31 |
| KXG21982 | Sorghum | cytosol | 57.5 | 58.31 |
| Zm00001d038165_P003 | Maize | cytosol | 56.67 | 58.12 |
| HORVU1Hr1G060810.1 | Barley | cytosol | 56.94 | 57.91 |
| TraesCS1D01G254500.1 | Wheat | cytosol | 56.67 | 57.63 |
| CDY16855 | Canola | cytosol | 36.11 | 38.81 |
| CDX87169 | Canola | cytosol | 35.56 | 38.21 |
| CDX88032 | Canola | cytosol | 35.0 | 37.61 |
| CDX80370 | Canola | cytosol | 34.72 | 37.31 |
| CDY55764 | Canola | cytosol | 21.11 | 32.48 |
| CDX81008 | Canola | cytosol | 29.44 | 31.74 |
| CDX70090 | Canola | cytosol | 29.17 | 31.63 |
| CDX98936 | Canola | cytosol | 29.17 | 31.63 |
| CDX69476 | Canola | cytosol | 28.06 | 30.42 |
| CDY70129 | Canola | cytosol | 28.06 | 30.33 |
| CDY18915 | Canola | cytosol | 27.22 | 30.06 |
| CDX74751 | Canola | cytosol | 26.39 | 29.87 |
| CDX87235 | Canola | cytosol, nucleus, plastid | 21.11 | 29.46 |
| CDY16790 | Canola | cytosol | 26.67 | 29.27 |
| CDY18914 | Canola | cytosol | 25.0 | 27.78 |
| CDX74752 | Canola | cytosol | 25.0 | 27.78 |
| CDY30708 | Canola | cytosol | 19.17 | 25.0 |
Protein Annotations
| MapMan:11.6.2.1 | Gene3D:3.40.50.1820 | GO:A0A078DIZ7 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_3 | EnsemblPlants:CDX89165 |
| ProteinID:CDX89165 | ProteinID:CDX89165.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00149320001 | InterPro:IPR029058 | InterPro:Lipase_GDXG_HIS_AS | InterPro:Lipase_GDXG_put_SER_AS | PFAM:PF07859 |
| ScanProsite:PS01173 | ScanProsite:PS01174 | PANTHER:PTHR23024 | PANTHER:PTHR23024:SF353 | SUPFAM:SSF53474 | UniParc:UPI0004EEAB61 |
Description
BnaA04g00210D
Coordinates
chrLK031857:+:1524862..1526227
Molecular Weight (calculated)
40546.3 Da
IEP (calculated)
7.160
GRAVY (calculated)
-0.201
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMAGGNEVN LNECKRIVPL NTWVLISNFK LAYTLLRRPD GSFNRHLAEF LDRKVPSNSF PLDGVFSFDH LDSTTNLLTR IYLPAPLDPS RHGTVDLTEP
101: LSTTEIVPVL IFFHGGSFTH SSANSAIYDT FCRRLVTICG VVVVSVDYRR SPEHRYPCAY DDGWNALKWV KSRIWLRSGK DSSVYVYLAG DSSGGNIAHN
201: VAVRATNEGV KVLGNILLHP MFGGVERTQS EKRLDGKYFV TVQDRDWYWR AYLPEGEDRD HPACNPFGPR GQSLEGVNFP KSLVVVAGLD LVQDWQLAYV
301: DGLKKTGHDV NLLYLKQATI GFYFLPNNDH FHCLMDELKK FVHSIEECSQ SKSSPILLSL
101: LSTTEIVPVL IFFHGGSFTH SSANSAIYDT FCRRLVTICG VVVVSVDYRR SPEHRYPCAY DDGWNALKWV KSRIWLRSGK DSSVYVYLAG DSSGGNIAHN
201: VAVRATNEGV KVLGNILLHP MFGGVERTQS EKRLDGKYFV TVQDRDWYWR AYLPEGEDRD HPACNPFGPR GQSLEGVNFP KSLVVVAGLD LVQDWQLAYV
301: DGLKKTGHDV NLLYLKQATI GFYFLPNNDH FHCLMDELKK FVHSIEECSQ SKSSPILLSL
001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP
Arabidopsis Description
GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.