Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34266 | Canola | nucleus | 98.63 | 98.63 |
| Bra013776.1-P | Field mustard | nucleus | 97.95 | 97.95 |
| AT4G24210.1 | Thale cress | cytosol | 71.23 | 68.87 |
| KRH15421 | Soybean | cytosol | 52.05 | 52.78 |
| VIT_18s0001g09700.t01 | Wine grape | nucleus | 66.44 | 52.72 |
| KRH52046 | Soybean | cytosol | 60.27 | 50.57 |
| KRH61359 | Soybean | cytosol | 60.27 | 48.09 |
| KRH05620 | Soybean | cytosol | 53.42 | 44.83 |
| GSMUA_Achr9P22610_001 | Banana | cytosol, nucleus, plastid | 46.58 | 41.72 |
| Solyc04g078390.1.1 | Tomato | cytosol, mitochondrion, nucleus | 58.22 | 39.35 |
| PGSC0003DMT400008560 | Potato | nucleus | 55.48 | 39.13 |
| TraesCS3A01G055700.1 | Wheat | nucleus | 39.04 | 26.27 |
| TraesCS3B01G068100.1 | Wheat | nucleus | 39.04 | 26.03 |
| CDY19964 | Canola | cytosol | 24.66 | 23.68 |
| CDY00072 | Canola | cytosol | 24.66 | 23.68 |
| CDX86323 | Canola | cytosol | 24.66 | 23.53 |
| CDY54510 | Canola | cytosol | 24.66 | 23.53 |
| Zm00001d016973_P001 | Maize | nucleus | 37.67 | 23.31 |
| CDY48737 | Canola | cytosol | 24.66 | 23.08 |
| CDY05699 | Canola | cytosol | 24.66 | 23.08 |
| OQU85206 | Sorghum | nucleus, plastid | 36.99 | 20.22 |
| Zm00001d050903_P001 | Maize | cytosol | 40.41 | 15.45 |
Protein Annotations
| EnsemblPlants:CDY03475 | EnsemblPlantsGene:GSBRNA2T00116137001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 | PFAM:PF00646 |
| PFscan:PS50181 | ProteinID:CDY03475 | ProteinID:CDY03475.1 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 |
| UniParc:UPI0004EE5799 | MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
BnaC01g16070D
Coordinates
chrLK031943:-:638158..638986
Molecular Weight (calculated)
16777.1 Da
IEP (calculated)
9.188
GRAVY (calculated)
-0.482
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSASDSVT DGDASPKKMK KTTEEDSEIG FANLDENLLY EVLKHVDART LATSSCVSKI WHRTAQDERL WELICTRHWA NIGCSQHQLR FVVLALGGFK
101: QLHSLYLWPL SSPNQHGRLG KDELKLSLSL LSIRYYEKMN FTKRLP
101: QLHSLYLWPL SSPNQHGRLG KDELKLSLSL LSIRYYEKMN FTKRLP
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
Arabidopsis Description
GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.